CircRNA Information

General Information
circRNA Basic Information
CircID chr2:95290007|95290178
Strand -
CircType exon
Host Gene ENSG00000155066.14;
Algorism CIRI2;
Sequence CAGCACTTAGCTTCTCTCTGAGTGCTGGCTCCCAAGGAAGGGACCTGGGACCTGGGCCACAGTGGGGGCTTGCCCTTACCTCTTCAGAAGGAAGCATCTTCCACAGCCCCCACCCAACTTTCTTAGGAGTGATCTGGTGGCCAGAACAGGATTTTGCACGGCCCCTTTTATC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:95290007|95290178 hsa-miR-19a-5p 0 0 1
chr2:95290007|95290178 hsa-miR-19a-3p 0 0 1
chr2:95290007|95290178 hsa-miR-302a-5p 0 0 1
chr2:95290007|95290178 hsa-miR-302a-3p 0 0 1
chr2:95290007|95290178 hsa-miR-302b-5p 0 0 1
chr2:95290007|95290178 hsa-miR-302b-3p 0 0 1
chr2:95290007|95290178 hsa-miR-302c-5p 0 0 1
chr2:95290007|95290178 hsa-miR-302c-3p 0 0 1
chr2:95290007|95290178 hsa-miR-302d-5p 0 0 1
chr2:95290007|95290178 hsa-miR-302d-3p 0 0 1
chr2:95290007|95290178 hsa-miR-372-5p 0 0 1
chr2:95290007|95290178 hsa-miR-372-3p 0 0 1
chr2:95290007|95290178 hsa-miR-373-5p 0 0 1
chr2:95290007|95290178 hsa-miR-373-3p 0 0 1
chr2:95290007|95290178 hsa-miR-520e-5p 0 0 1
chr2:95290007|95290178 hsa-miR-520e-3p 0 0 1
chr2:95290007|95290178 hsa-miR-520b-5p 0 0 1
chr2:95290007|95290178 hsa-miR-520b-3p 0 0 1
chr2:95290007|95290178 hsa-miR-588 0 0 1
chr2:95290007|95290178 hsa-miR-920 0 0 1
chr2:95290007|95290178 hsa-miR-1237-5p 0 0 1
chr2:95290007|95290178 hsa-miR-1237-3p 0 0 1
chr2:95290007|95290178 hsa-miR-663b 0 1 1
chr2:95290007|95290178 hsa-miR-1293 0 0 1
chr2:95290007|95290178 hsa-miR-1248 0 0 1
chr2:95290007|95290178 hsa-miR-1262 0 0 1
chr2:95290007|95290178 hsa-miR-302e 0 0 1
chr2:95290007|95290178 hsa-miR-512-3p 0 0 1
chr2:95290007|95290178 hsa-miR-502-5p 0 0 1
chr2:95290007|95290178 hsa-miR-483-3p 0 0 1
chr2:95290007|95290178 hsa-miR-520d-3p 0 0 1
chr2:95290007|95290178 hsa-miR-519b-3p 0 0 1
chr2:95290007|95290178 hsa-miR-519c-3p 0 0 1
chr2:95290007|95290178 hsa-miR-520a-3p 0 0 1
chr2:95290007|95290178 hsa-miR-520c-3p 1 0 1
chr2:95290007|95290178 hsa-miR-516a-3p 0 1 1
chr2:95290007|95290178 hsa-miR-7 0 0 1
chr2:95290007|95290178 hsa-miR-19b 0 0 1
chr2:95290007|95290178 hsa-miR-519a 0 0 1
chr2:95290007|95290178 hsa-miR-608 1 0 0
chr2:95290007|95290178 hsa-miR-4259 0 1 0
chr2:95290007|95290178 hsa-miR-4447 0 1 0
chr2:95290007|95290178 hsa-miR-4449 1 0 0
chr2:95290007|95290178 hsa-miR-4498 1 0 0
chr2:95290007|95290178 hsa-miR-4518 0 1 0
chr2:95290007|95290178 hsa-miR-4651 1 0 0
chr2:95290007|95290178 hsa-miR-5787 1 0 0
chr2:95290007|95290178 hsa-miR-7704 1 0 0
chr2:95290007|95290178 hsa-miR-7974 1 1 0
chr2:95290007|95290178 hsa-miR-9900 0 1 0
chr2:95290007|95290178 hsa-miR-128-1-5p 1 1 0
chr2:95290007|95290178 hsa-miR-4726-3p 1 1 0
chr2:95290007|95290178 hsa-miR-6894-5p 1 0 0
chr2:95290007|95290178 hsa-miR-4687-3p 1 0 0
chr2:95290007|95290178 hsa-miR-6833-5p 0 1 0
chr2:95290007|95290178 hsa-miR-7114-5p 0 1 0
chr2:95290007|95290178 hsa-miR-4709-3p 0 1 0
chr2:95290007|95290178 hsa-miR-505-5p 0 1 0
chr2:95290007|95290178 hsa-miR-7108-5p 0 1 0
chr2:95290007|95290178 hsa-miR-185-3p 1 0 0
chr2:95290007|95290178 hsa-miR-6732-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6760-5p 0 1 0
chr2:95290007|95290178 hsa-miR-6786-5p 1 0 0
chr2:95290007|95290178 hsa-miR-1229-5p 1 0 0
chr2:95290007|95290178 hsa-miR-1228-5p 1 0 0
chr2:95290007|95290178 hsa-miR-296-3p 0 1 0
chr2:95290007|95290178 hsa-miR-1266-3p 0 1 0
chr2:95290007|95290178 hsa-miR-6878-5p 0 1 0
chr2:95290007|95290178 hsa-miR-3190-5p 0 1 0
chr2:95290007|95290178 hsa-miR-887-5p 0 1 0
chr2:95290007|95290178 hsa-miR-3191-3p 1 0 0
chr2:95290007|95290178 hsa-miR-2114-5p 0 1 0
chr2:95290007|95290178 hsa-miR-4668-3p 0 1 0
chr2:95290007|95290178 hsa-miR-6743-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6756-5p 1 1 0
chr2:95290007|95290178 hsa-miR-6803-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6813-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6819-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6779-5p 1 0 0
chr2:95290007|95290178 hsa-miR-4728-5p 1 0 0
chr2:95290007|95290178 hsa-miR-10526-3p 1 0 0
chr2:95290007|95290178 hsa-miR-1909-3p 1 0 0
chr2:95290007|95290178 hsa-miR-6846-5p 0 1 0
chr2:95290007|95290178 hsa-miR-6848-5p 1 1 0
chr2:95290007|95290178 hsa-miR-3940-5p 1 0 0
chr2:95290007|95290178 hsa-miR-6856-5p 0 1 0
chr2:95290007|95290178 hsa-miR-6736-5p 1 0 0
chr2:95290007|95290178 hsa-miR-4472 0 1 0
chr2:95290007|95290178 hsa-miR-6762-5p 1 0 0
chr2:95290007|95290178 hsa-miR-4701-5p 0 1 0
chr2:95290007|95290178 hsa-miR-520f-3p 1 0 0
chr2:95290007|95290178 hsa-miR-526b-3p 1 0 0
chr2:95290007|95290178 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:95290007|95290178
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MAPKEGTWDLGHSGGLPLPLQKEASSTAPTQLS
Nucleotide Sequence CTGGCTCCCAAGGAAGGGACCTGGGACCTGGGCCACAGTGGGGGCTTGCCCTTACCTCTTCAGAAGGAAGCATCTTCCACAGCCCCCACCCAACTTTCTTAG
CircID chr2:95290007|95290178
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MSAGSQGRDLGPGPQWGLALTSSEGSIFHSPHPTFLGVIWWPEQDFARPLL
Nucleotide Sequence CTGAGTGCTGGCTCCCAAGGAAGGGACCTGGGACCTGGGCCACAGTGGGGGCTTGCCCTTACCTCTTCAGAAGGAAGCATCTTCCACAGCCCCCACCCAACTTTCTTAGGAGTGATCTGGTGGCCAGAACAGGATTTTGCACGGCCCCTTTTA
CircID chr2:95290007|95290178
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MWKMLPSEEVRASPHCGPGPRSLPWEPALREKLSA
Nucleotide Sequence CTGTGGAAGATGCTTCCTTCTGAAGAGGTAAGGGCAAGCCCCCACTGTGGCCCAGGTCCCAGGTCCCTTCCTTGGGAGCCAGCACTCAGAGAGAAGCTAAGTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab