CircRNA Information

General Information
circRNA Basic Information
CircID chr2:9585075|9585299
Strand -
CircType exon
Host Gene ENSG00000134308.12;
Algorism CIRI2;
Sequence TTTTCTACAGCAGTACTGCACACCAGGAAGGCCAAGACAAACACAAATCAAGGAATGAAGTTTTCCCAAAGCTGCAGTGTGAAAAGACTATAAACAGTTGATTCCATACACATGAATGGGTTTCTTTGCTATAGGAAATCCAAGTGGAATAAGGAATGGAGATGTGTAAAAAGGTTTCTTGAAGGAAAGAAGGATGACACCCTGTATGGATTTAGTTTTCAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:9585075|9585299 hsa-miR-205-5p 0 0 1
chr2:9585075|9585299 hsa-miR-205-3p 0 0 1
chr2:9585075|9585299 hsa-miR-136-5p 0 0 1
chr2:9585075|9585299 hsa-miR-136-3p 0 0 1
chr2:9585075|9585299 hsa-miR-377-5p 0 0 1
chr2:9585075|9585299 hsa-miR-377-3p 0 0 1
chr2:9585075|9585299 hsa-miR-384 0 0 1
chr2:9585075|9585299 hsa-miR-431-5p 0 0 1
chr2:9585075|9585299 hsa-miR-431-3p 0 0 1
chr2:9585075|9585299 hsa-miR-452-5p 0 0 1
chr2:9585075|9585299 hsa-miR-452-3p 0 0 1
chr2:9585075|9585299 hsa-miR-511-5p 0 0 1
chr2:9585075|9585299 hsa-miR-511-3p 0 0 1
chr2:9585075|9585299 hsa-miR-570-5p 0 0 1
chr2:9585075|9585299 hsa-miR-570-3p 0 0 1
chr2:9585075|9585299 hsa-miR-599 0 0 1
chr2:9585075|9585299 hsa-miR-605-5p 0 0 1
chr2:9585075|9585299 hsa-miR-605-3p 0 0 1
chr2:9585075|9585299 hsa-miR-660-5p 0 0 1
chr2:9585075|9585299 hsa-miR-660-3p 0 0 1
chr2:9585075|9585299 hsa-miR-1301-5p 0 0 1
chr2:9585075|9585299 hsa-miR-1301-3p 0 0 1
chr2:9585075|9585299 hsa-miR-1298-5p 0 0 1
chr2:9585075|9585299 hsa-miR-1298-3p 0 0 1
chr2:9585075|9585299 hsa-miR-890 0 0 1
chr2:9585075|9585299 hsa-miR-1237-5p 0 0 1
chr2:9585075|9585299 hsa-miR-1237-3p 0 0 1
chr2:9585075|9585299 hsa-miR-1290 0 0 1
chr2:9585075|9585299 hsa-miR-1248 0 0 1
chr2:9585075|9585299 hsa-miR-548p 0 0 1
chr2:9585075|9585299 hsa-miR-1278 0 0 1
chr2:9585075|9585299 hsa-miR-1184 0 0 1
chr2:9585075|9585299 hsa-miR-502-5p 0 0 1
chr2:9585075|9585299 hsa-miR-337-3p 0 0 1
chr2:9585075|9585299 hsa-miR-509-3-5p 0 1 1
chr2:9585075|9585299 hsa-miR-509-5p 0 1 1
chr2:9585075|9585299 hsa-miR-876-5p 0 0 1
chr2:9585075|9585299 hsa-miR-2110 1 0 0
chr2:9585075|9585299 hsa-miR-4297 0 1 0
chr2:9585075|9585299 hsa-miR-4656 0 1 0
chr2:9585075|9585299 hsa-miR-7978 0 1 0
chr2:9585075|9585299 hsa-miR-10226 0 1 0
chr2:9585075|9585299 hsa-miR-143-5p 0 1 0
chr2:9585075|9585299 hsa-miR-5004-3p 0 1 0
chr2:9585075|9585299 hsa-miR-3614-5p 0 1 0
chr2:9585075|9585299 hsa-miR-500a-5p 1 0 0
chr2:9585075|9585299 hsa-miR-10397-5p 1 0 0
chr2:9585075|9585299 hsa-miR-6807-3p 1 0 0
chr2:9585075|9585299 hsa-miR-146a-5p 0 1 0
chr2:9585075|9585299 hsa-miR-146b-5p 0 1 0
chr2:9585075|9585299 hsa-miR-130a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:9585075|9585299
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MHTRKAKTNTNQGMKFSQSCSVKRL
Nucleotide Sequence CTGCACACCAGGAAGGCCAAGACAAACACAAATCAAGGAATGAAGTTTTCCCAAAGCTGCAGTGTGAAAAGACTATAA
CircID chr2:9585075|9585299
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MNGFLCYRKSKWNKEWRCVKRFLEGKKDDTLYGFSFQP
Nucleotide Sequence ATGAATGGGTTTCTTTGCTATAGGAAATCCAAGTGGAATAAGGAATGGAGATGTGTAAAAAGGTTTCTTGAAGGAAAGAAGGATGACACCCTGTATGGATTTAGTTTTCAGCCC
CircID chr2:9585075|9585299
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MKTKSIQGVILLSFKKPFYTSPFLIPLGFPIAKKPIHVYGINCL
Nucleotide Sequence CTGAAAACTAAATCCATACAGGGTGTCATCCTTCTTTCCTTCAAGAAACCTTTTTACACATCTCCATTCCTTATTCCACTTGGATTTCCTATAGCAAAGAAACCCATTCATGTGTATGGAATCAACTGTTTATAG
CircID chr2:9585075|9585299
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MFIVFSHCSFGKTSFLDLCLSWPSWCAVLL
Nucleotide Sequence CTGTTTATAGTCTTTTCACACTGCAGCTTTGGGAAAACTTCATTCCTTGATTTGTGTTTGTCTTGGCCTTCCTGGTGTGCAGTACTGCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab