CircRNA Information

General Information
circRNA Basic Information
CircID chr2:96143587|96143782
Strand -
CircType exon
Host Gene ENSG00000158050.4;
Algorism CIRI2;
Sequence ACCCTTGGTTCCCGACCCCGAATGAGGGCCAGCCTCAGTCCCCCAGCAGAAGAGCACCAGGTCGGAAAGACCAGCATGCCGGCATTCCTAGAGCCCCCATGTGGGGGCTTCTGAAACTCTGAGGAGGTAGCAGCCCTGCCAGAGGTGAGGGGACTGTGCTGGCCCAGAGGGGAGCCCACCAGTCCACAGTCAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:96143587|96143782 hsa-miR-328-5p 0 0 1
chr2:96143587|96143782 hsa-miR-328-3p 0 0 1
chr2:96143587|96143782 hsa-miR-326 0 1 1
chr2:96143587|96143782 hsa-miR-612 0 0 1
chr2:96143587|96143782 hsa-miR-625-5p 0 0 1
chr2:96143587|96143782 hsa-miR-625-3p 0 0 1
chr2:96143587|96143782 hsa-miR-631 0 0 1
chr2:96143587|96143782 hsa-miR-637 0 1 1
chr2:96143587|96143782 hsa-miR-1298-5p 0 0 1
chr2:96143587|96143782 hsa-miR-1298-3p 0 0 1
chr2:96143587|96143782 hsa-miR-541-5p 0 0 1
chr2:96143587|96143782 hsa-miR-541-3p 0 0 1
chr2:96143587|96143782 hsa-miR-943 0 0 1
chr2:96143587|96143782 hsa-miR-1291 0 0 1
chr2:96143587|96143782 hsa-miR-1275 0 1 1
chr2:96143587|96143782 hsa-miR-1288-5p 0 0 1
chr2:96143587|96143782 hsa-miR-1288-3p 0 0 1
chr2:96143587|96143782 hsa-miR-485-5p 0 1 1
chr2:96143587|96143782 hsa-miR-654-5p 0 0 1
chr2:96143587|96143782 hsa-miR-1207-5p 1 1 1
chr2:96143587|96143782 hsa-miR-330-5p 0 1 1
chr2:96143587|96143782 hsa-miR-886-5p 0 0 1
chr2:96143587|96143782 hsa-miR-1269 0 0 1
chr2:96143587|96143782 hsa-miR-138 0 0 1
chr2:96143587|96143782 hsa-miR-1285 0 0 1
chr2:96143587|96143782 hsa-miR-762 1 0 0
chr2:96143587|96143782 hsa-miR-940 1 0 0
chr2:96143587|96143782 hsa-miR-4265 1 0 0
chr2:96143587|96143782 hsa-miR-3907 1 0 0
chr2:96143587|96143782 hsa-miR-4456 0 1 0
chr2:96143587|96143782 hsa-miR-4491 0 1 0
chr2:96143587|96143782 hsa-miR-1587 1 0 0
chr2:96143587|96143782 hsa-miR-4741 1 0 0
chr2:96143587|96143782 hsa-miR-6132 0 1 0
chr2:96143587|96143782 hsa-miR-7704 0 1 0
chr2:96143587|96143782 hsa-miR-370-3p 1 0 0
chr2:96143587|96143782 hsa-miR-4731-5p 0 1 0
chr2:96143587|96143782 hsa-miR-504-3p 1 0 0
chr2:96143587|96143782 hsa-miR-6857-5p 1 0 0
chr2:96143587|96143782 hsa-miR-7851-3p 1 0 0
chr2:96143587|96143782 hsa-miR-7114-5p 0 1 0
chr2:96143587|96143782 hsa-miR-6089 1 0 0
chr2:96143587|96143782 hsa-miR-3064-5p 0 1 0
chr2:96143587|96143782 hsa-miR-6762-3p 1 1 0
chr2:96143587|96143782 hsa-miR-3663-5p 1 1 0
chr2:96143587|96143782 hsa-miR-6796-5p 1 0 0
chr2:96143587|96143782 hsa-miR-185-3p 1 1 0
chr2:96143587|96143782 hsa-miR-6829-5p 1 0 0
chr2:96143587|96143782 hsa-miR-6798-5p 1 0 0
chr2:96143587|96143782 hsa-miR-1909-5p 1 0 0
chr2:96143587|96143782 hsa-miR-3677-3p 1 0 0
chr2:96143587|96143782 hsa-miR-4717-3p 0 1 0
chr2:96143587|96143782 hsa-miR-6749-5p 1 0 0
chr2:96143587|96143782 hsa-miR-7112-5p 1 0 0
chr2:96143587|96143782 hsa-miR-3191-3p 1 0 0
chr2:96143587|96143782 hsa-miR-6826-3p 0 1 0
chr2:96143587|96143782 hsa-miR-4649-3p 0 1 0
chr2:96143587|96143782 hsa-miR-518c-5p 1 0 0
chr2:96143587|96143782 hsa-miR-4283 0 1 0
chr2:96143587|96143782 hsa-miR-6857-3p 0 1 0
chr2:96143587|96143782 hsa-miR-4763-3p 1 1 0
chr2:96143587|96143782 hsa-miR-6803-5p 1 0 0
chr2:96143587|96143782 hsa-miR-6813-5p 1 0 0
chr2:96143587|96143782 hsa-miR-6751-5p 1 0 0
chr2:96143587|96143782 hsa-miR-3620-5p 1 0 0
chr2:96143587|96143782 hsa-miR-10396b-5p 1 0 0
chr2:96143587|96143782 hsa-miR-6794-5p 1 1 0
chr2:96143587|96143782 hsa-miR-6848-5p 1 1 0
chr2:96143587|96143782 hsa-miR-939-5p 1 0 0
chr2:96143587|96143782 hsa-miR-10398-5p 0 1 0
chr2:96143587|96143782 hsa-miR-9851-5p 0 1 0
chr2:96143587|96143782 hsa-miR-10400-3p 0 1 0
chr2:96143587|96143782 hsa-miR-1301-5p 0 1 0
chr2:96143587|96143782 hsa-miR-4712-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:96143587|96143782
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MRASLSPPAEEHQVGKTSMPAFLEPPCGGF
Nucleotide Sequence ATGAGGGCCAGCCTCAGTCCCCCAGCAGAAGAGCACCAGGTCGGAAAGACCAGCATGCCGGCATTCCTAGAGCCCCCATGTGGGGGCTTCTGA
CircID chr2:96143587|96143782
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MTVDWWAPLWASTVPSPLAGLLPPQSFRSPHMGALGMPACWSFRPGALLLGD
Nucleotide Sequence CTGACTGTGGACTGGTGGGCTCCCCTCTGGGCCAGCACAGTCCCCTCACCTCTGGCAGGGCTGCTACCTCCTCAGAGTTTCAGAAGCCCCCACATGGGGGCTCTAGGAATGCCGGCATGCTGGTCTTTCCGACCTGGTGCTCTTCTGCTGGGGGACTGA
CircID chr2:96143587|96143782
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MWTGGLPSGPAQSPHLWQGCYLLRVSEAPTWGL
Nucleotide Sequence CTGTGGACTGGTGGGCTCCCCTCTGGGCCAGCACAGTCCCCTCACCTCTGGCAGGGCTGCTACCTCCTCAGAGTTTCAGAAGCCCCCACATGGGGGCTCTAG
CircID chr2:96143587|96143782
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MVGSPLGQHSPLTSGRAATSSEFQKPPHGGSRNAGMLVFPTWCSSAGGLRLALIRGREPR
Nucleotide Sequence CTGGTGGGCTCCCCTCTGGGCCAGCACAGTCCCCTCACCTCTGGCAGGGCTGCTACCTCCTCAGAGTTTCAGAAGCCCCCACATGGGGGCTCTAGGAATGCCGGCATGCTGGTCTTTCCGACCTGGTGCTCTTCTGCTGGGGGACTGAGGCTGGCCCTCATTCGGGGTCGGGAACCAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab