CircRNA Information

General Information
circRNA Basic Information
CircID chr2:96250015|96250122
Strand -
CircType exon
Host Gene ENSG00000135956.7;
Algorism CIRI2;
Sequence CTGGCTGAGACACTGGGCCCTGGGATTGACTGTGACCGCCCTCTTCCCCTTTGGCAGGTCCTGTCTCCCACTTTCAACACCCTCACTTAAGGCCAGGCAGAACCCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:96250015|96250122 hsa-miR-27a-5p 0 0 1
chr2:96250015|96250122 hsa-miR-27a-3p 0 0 1
chr2:96250015|96250122 hsa-miR-27b-5p 0 0 1
chr2:96250015|96250122 hsa-miR-27b-3p 0 0 1
chr2:96250015|96250122 hsa-miR-488-5p 0 0 1
chr2:96250015|96250122 hsa-miR-488-3p 0 0 1
chr2:96250015|96250122 hsa-miR-492 0 1 1
chr2:96250015|96250122 hsa-miR-609 0 0 1
chr2:96250015|96250122 hsa-miR-661 1 0 1
chr2:96250015|96250122 hsa-miR-653-5p 0 0 1
chr2:96250015|96250122 hsa-miR-653-3p 0 0 1
chr2:96250015|96250122 hsa-miR-199a-5p 0 1 1
chr2:96250015|96250122 hsa-miR-199b-5p 0 1 1
chr2:96250015|96250122 hsa-miR-128 0 0 1
chr2:96250015|96250122 hsa-miR-1254 0 0 1
chr2:96250015|96250122 hsa-miR-2861 1 0 0
chr2:96250015|96250122 hsa-miR-378b 1 0 0
chr2:96250015|96250122 hsa-miR-3154 1 0 0
chr2:96250015|96250122 hsa-miR-3176 1 0 0
chr2:96250015|96250122 hsa-miR-3185 1 0 0
chr2:96250015|96250122 hsa-miR-4271 0 1 0
chr2:96250015|96250122 hsa-miR-3918 0 1 0
chr2:96250015|96250122 hsa-miR-378e 1 0 0
chr2:96250015|96250122 hsa-miR-4721 1 0 0
chr2:96250015|96250122 hsa-miR-4739 1 0 0
chr2:96250015|96250122 hsa-miR-6127 1 0 0
chr2:96250015|96250122 hsa-miR-6747-5p 0 1 0
chr2:96250015|96250122 hsa-miR-7106-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6804-5p 0 1 0
chr2:96250015|96250122 hsa-miR-139-3p 0 1 0
chr2:96250015|96250122 hsa-miR-6089 1 0 0
chr2:96250015|96250122 hsa-miR-3180-3p 1 0 0
chr2:96250015|96250122 hsa-miR-6793-5p 1 0 0
chr2:96250015|96250122 hsa-miR-23a-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6798-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6782-5p 1 0 0
chr2:96250015|96250122 hsa-miR-1226-5p 1 0 0
chr2:96250015|96250122 hsa-miR-30c-2-3p 0 1 0
chr2:96250015|96250122 hsa-miR-7160-3p 0 1 0
chr2:96250015|96250122 hsa-miR-7152-3p 1 0 0
chr2:96250015|96250122 hsa-miR-4524a-3p 0 1 0
chr2:96250015|96250122 hsa-miR-4524b-3p 0 1 0
chr2:96250015|96250122 hsa-miR-1233-5p 0 1 0
chr2:96250015|96250122 hsa-miR-6778-5p 0 1 0
chr2:96250015|96250122 hsa-miR-6870-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6743-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6752-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6803-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6851-5p 1 0 0
chr2:96250015|96250122 hsa-miR-7107-5p 1 0 0
chr2:96250015|96250122 hsa-miR-7110-5p 1 0 0
chr2:96250015|96250122 hsa-miR-5196-5p 1 0 0
chr2:96250015|96250122 hsa-miR-10526-3p 0 1 0
chr2:96250015|96250122 hsa-miR-4685-5p 0 1 0
chr2:96250015|96250122 hsa-miR-4725-3p 1 1 0
chr2:96250015|96250122 hsa-miR-6729-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6795-5p 1 0 0
chr2:96250015|96250122 hsa-miR-3116 1 0 0
chr2:96250015|96250122 hsa-miR-4747-5p 1 0 0
chr2:96250015|96250122 hsa-miR-330-5p 1 0 0
chr2:96250015|96250122 hsa-miR-6764-5p 0 1 0
chr2:96250015|96250122 hsa-miR-3922-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:96250015|96250122
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LAETLGPGIDCDRPLPLWQVLSPTFNTLT
Nucleotide Sequence CTGGCTGAGACACTGGGCCCTGGGATTGACTGTGACCGCCCTCTTCCCCTTTGGCAGGTCCTGTCTCCCACTTTCAACACCCTCACTTAA
CircID chr2:96250015|96250122
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MRHWALGLTVTALFPFGRSCLPLSTPSLKARQNP
Nucleotide Sequence CTGAGACACTGGGCCCTGGGATTGACTGTGACCGCCCTCTTCCCCTTTGGCAGGTCCTGTCTCCCACTTTCAACACCCTCACTTAAGGCCAGGCAGAACCCT
CircID chr2:96250015|96250122
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MALSEGVESGRQDLPKGKRAVTVNPRAQCLSQ
Nucleotide Sequence CTGGCCTTAAGTGAGGGTGTTGAAAGTGGGAGACAGGACCTGCCAAAGGGGAAGAGGGCGGTCACAGTCAATCCCAGGGCCCAGTGTCTCAGCCAG
CircID chr2:96250015|96250122
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MKVGDRTCQRGRGRSQSIPGPSVSA
Nucleotide Sequence TTGAAAGTGGGAGACAGGACCTGCCAAAGGGGAAGAGGGCGGTCACAGTCAATCCCAGGGCCCAGTGTCTCAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab