CircRNA Information

General Information
circRNA Basic Information
CircID chr2:96275026|96275337
Strand -
CircType exon
Host Gene ENSG00000144028.13;
Algorism CIRI2;
Sequence TGTCTGTCTCAGCTTCTTTCACATCCACGCTGAATTTGTACTCCTGGTCACATCCCATGTAAGCGTCACTCATGAAGTACAGAGTGTAGTTGTGGGCACCAGTGGCTGGGGCCACAAAGTCCAACTTCACCTAGAAAGAGCAGGCAGAAATCAAGATGAGCATGGACACAGGAAGCATTCTCACCCTTCCCCCATGCCAGAACAAATGCTAGGGCCAGTGGACACACTCACCTTGGCCTTCTGCTGCAAGGTCAGCCTCTTGATGGAGATGAGGCTATTGGACTTGGCATCTCCAATCACCACCCACCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:96275026|96275337 hsa-miR-107 0 0 1
chr2:96275026|96275337 hsa-miR-136-5p 0 0 1
chr2:96275026|96275337 hsa-miR-136-3p 0 0 1
chr2:96275026|96275337 hsa-miR-375-5p 0 0 1
chr2:96275026|96275337 hsa-miR-375-3p 0 0 1
chr2:96275026|96275337 hsa-miR-328-5p 0 0 1
chr2:96275026|96275337 hsa-miR-328-3p 0 0 1
chr2:96275026|96275337 hsa-miR-335-5p 0 0 1
chr2:96275026|96275337 hsa-miR-335-3p 0 0 1
chr2:96275026|96275337 hsa-miR-433-5p 0 0 1
chr2:96275026|96275337 hsa-miR-433-3p 0 0 1
chr2:96275026|96275337 hsa-miR-193b-5p 0 0 1
chr2:96275026|96275337 hsa-miR-193b-3p 0 0 1
chr2:96275026|96275337 hsa-miR-580-5p 0 0 1
chr2:96275026|96275337 hsa-miR-580-3p 0 0 1
chr2:96275026|96275337 hsa-miR-620 0 0 1
chr2:96275026|96275337 hsa-miR-625-5p 0 0 1
chr2:96275026|96275337 hsa-miR-625-3p 0 0 1
chr2:96275026|96275337 hsa-miR-1301-5p 0 0 1
chr2:96275026|96275337 hsa-miR-1301-3p 0 0 1
chr2:96275026|96275337 hsa-miR-298 0 1 1
chr2:96275026|96275337 hsa-miR-541-5p 0 0 1
chr2:96275026|96275337 hsa-miR-541-3p 0 0 1
chr2:96275026|96275337 hsa-miR-665 0 0 1
chr2:96275026|96275337 hsa-miR-922 0 0 1
chr2:96275026|96275337 hsa-miR-1179 0 0 1
chr2:96275026|96275337 hsa-miR-663b 1 1 1
chr2:96275026|96275337 hsa-miR-1291 0 0 1
chr2:96275026|96275337 hsa-miR-1293 1 1 1
chr2:96275026|96275337 hsa-miR-1270 0 0 1
chr2:96275026|96275337 hsa-miR-1275 0 1 1
chr2:96275026|96275337 hsa-miR-485-5p 0 1 1
chr2:96275026|96275337 hsa-miR-574-5p 0 0 1
chr2:96275026|96275337 hsa-miR-654-5p 0 0 1
chr2:96275026|96275337 hsa-miR-509-3p 0 0 1
chr2:96275026|96275337 hsa-miR-193a-3p 0 0 1
chr2:96275026|96275337 hsa-miR-516a-3p 0 0 1
chr2:96275026|96275337 hsa-miR-103 0 0 1
chr2:96275026|96275337 hsa-miR-1269 0 0 1
chr2:96275026|96275337 hsa-miR-138 0 0 1
chr2:96275026|96275337 hsa-miR-544 0 0 1
chr2:96275026|96275337 hsa-miR-923 0 0 1
chr2:96275026|96275337 hsa-miR-608 1 0 0
chr2:96275026|96275337 hsa-miR-622 1 0 0
chr2:96275026|96275337 hsa-miR-636 1 0 0
chr2:96275026|96275337 hsa-miR-1294 0 1 0
chr2:96275026|96275337 hsa-miR-1268a 1 0 0
chr2:96275026|96275337 hsa-miR-1538 1 0 0
chr2:96275026|96275337 hsa-miR-4327 1 0 0
chr2:96275026|96275337 hsa-miR-3911 1 1 0
chr2:96275026|96275337 hsa-miR-3929 0 1 0
chr2:96275026|96275337 hsa-miR-1268b 1 0 0
chr2:96275026|96275337 hsa-miR-4538 1 0 0
chr2:96275026|96275337 hsa-miR-4651 1 0 0
chr2:96275026|96275337 hsa-miR-4656 1 0 0
chr2:96275026|96275337 hsa-miR-4657 1 1 0
chr2:96275026|96275337 hsa-miR-4658 1 1 0
chr2:96275026|96275337 hsa-miR-6165 1 0 0
chr2:96275026|96275337 hsa-miR-8058 0 1 0
chr2:96275026|96275337 hsa-miR-8075 1 0 0
chr2:96275026|96275337 hsa-miR-138-5p 0 1 0
chr2:96275026|96275337 hsa-miR-370-3p 1 0 0
chr2:96275026|96275337 hsa-miR-6747-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6857-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6881-3p 1 0 0
chr2:96275026|96275337 hsa-miR-6728-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6833-5p 1 0 0
chr2:96275026|96275337 hsa-miR-1236-5p 0 1 0
chr2:96275026|96275337 hsa-miR-4753-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6820-5p 1 0 0
chr2:96275026|96275337 hsa-miR-874-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6875-3p 1 0 0
chr2:96275026|96275337 hsa-miR-3622b-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6759-5p 1 0 0
chr2:96275026|96275337 hsa-miR-4677-5p 1 0 0
chr2:96275026|96275337 hsa-miR-7108-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6748-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6793-5p 1 0 0
chr2:96275026|96275337 hsa-miR-185-3p 1 0 0
chr2:96275026|96275337 hsa-miR-6728-3p 1 0 0
chr2:96275026|96275337 hsa-miR-3691-3p 0 1 0
chr2:96275026|96275337 hsa-miR-6894-3p 0 1 0
chr2:96275026|96275337 hsa-miR-6514-3p 1 0 0
chr2:96275026|96275337 hsa-miR-5001-3p 0 1 0
chr2:96275026|96275337 hsa-miR-4764-5p 1 1 0
chr2:96275026|96275337 hsa-miR-3202 1 1 0
chr2:96275026|96275337 hsa-miR-32-3p 0 1 0
chr2:96275026|96275337 hsa-miR-6811-3p 1 0 0
chr2:96275026|96275337 hsa-miR-4529-3p 0 1 0
chr2:96275026|96275337 hsa-miR-6738-3p 1 1 0
chr2:96275026|96275337 hsa-miR-6761-5p 1 0 0
chr2:96275026|96275337 hsa-miR-3200-3p 0 1 0
chr2:96275026|96275337 hsa-miR-3664-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6769b-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6778-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6812-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6737-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6752-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6756-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6769a-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6803-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6819-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6763-5p 1 0 0
chr2:96275026|96275337 hsa-miR-4728-5p 1 0 0
chr2:96275026|96275337 hsa-miR-5196-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6780b-5p 0 1 0
chr2:96275026|96275337 hsa-miR-4725-3p 0 1 0
chr2:96275026|96275337 hsa-miR-4745-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6795-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6883-5p 1 0 0
chr2:96275026|96275337 hsa-miR-1271-3p 1 0 0
chr2:96275026|96275337 hsa-miR-4665-5p 0 1 0
chr2:96275026|96275337 hsa-miR-6785-5p 1 0 0
chr2:96275026|96275337 hsa-miR-6790-5p 1 1 0
chr2:96275026|96275337 hsa-miR-6805-3p 1 0 0
chr2:96275026|96275337 hsa-miR-6829-3p 1 0 0
chr2:96275026|96275337 hsa-miR-3085-3p 1 0 0
chr2:96275026|96275337 hsa-miR-3619-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:96275026|96275337
ORF Type ORF1
Protein Length 89
Nucleotide Length 267
Protein Sequence MVTSHVSVTHEVQSVVVGTSGWGHKVQLHLERAGRNQDEHGHRKHSHPSPMPEQMLGPVDTLTLAFCCKVSLLMEMRLLDLASPITTHQ
Nucleotide Sequence CTGGTCACATCCCATGTAAGCGTCACTCATGAAGTACAGAGTGTAGTTGTGGGCACCAGTGGCTGGGGCCACAAAGTCCAACTTCACCTAGAAAGAGCAGGCAGAAATCAAGATGAGCATGGACACAGGAAGCATTCTCACCCTTCCCCCATGCCAGAACAAATGCTAGGGCCAGTGGACACACTCACCTTGGCCTTCTGCTGCAAGGTCAGCCTCTTGATGGAGATGAGGCTATTGGACTTGGCATCTCCAATCACCACCCACCAG
CircID chr2:96275026|96275337
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MALAFVLAWGKGENASCVHAHLDFCLLFLGEVGLCGPSHWCPQLHSVLHE
Nucleotide Sequence CTGGCCCTAGCATTTGTTCTGGCATGGGGGAAGGGTGAGAATGCTTCCTGTGTCCATGCTCATCTTGATTTCTGCCTGCTCTTTCTAGGTGAAGTTGGACTTTGTGGCCCCAGCCACTGGTGCCCACAACTACACTCTGTACTTCATGAGTGA
CircID chr2:96275026|96275337
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD
Nucleotide Sequence TTGGACTTTGTGGCCCCAGCCACTGGTGCCCACAACTACACTCTGTACTTCATGAGTGACGCTTACATGGGATGTGACCAGGAGTACAAATTCAGCGTGGATGTGAAAGAAGCTGAGACAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab