CircRNA Information

General Information
circRNA Basic Information
CircID chr2:96595545|96601663
Strand -
CircType exon
Host Gene ENSG00000114982.16;
Algorism CIRI2;
Sequence CTGTCCAGGGCCCACCATGAGGCAGCCATCACCAACTTGGTAAGGAGGACATATCACACAGCATCTTCAGGGTGCTGGAGGCAGGCGCTGTGAGCTGGAGGGCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:96595545|96601663 hsa-miR-604 0 0 1
chr2:96595545|96601663 hsa-miR-647 0 1 1
chr2:96595545|96601663 hsa-miR-766-5p 0 0 1
chr2:96595545|96601663 hsa-miR-766-3p 0 0 1
chr2:96595545|96601663 hsa-miR-541-5p 0 0 1
chr2:96595545|96601663 hsa-miR-541-3p 0 0 1
chr2:96595545|96601663 hsa-miR-190b-5p 0 0 1
chr2:96595545|96601663 hsa-miR-190b-3p 0 0 1
chr2:96595545|96601663 hsa-miR-1291 0 0 1
chr2:96595545|96601663 hsa-miR-296-5p 0 0 1
chr2:96595545|96601663 hsa-miR-654-5p 0 1 1
chr2:96595545|96601663 hsa-miR-338-3p 0 0 1
chr2:96595545|96601663 hsa-miR-190 0 0 1
chr2:96595545|96601663 hsa-miR-3689f 0 1 0
chr2:96595545|96601663 hsa-miR-6749-3p 1 0 0
chr2:96595545|96601663 hsa-miR-6747-3p 1 1 0
chr2:96595545|96601663 hsa-miR-3189-5p 0 1 0
chr2:96595545|96601663 hsa-miR-1915-5p 1 0 0
chr2:96595545|96601663 hsa-miR-6882-3p 1 1 0
chr2:96595545|96601663 hsa-miR-345-3p 0 1 0
chr2:96595545|96601663 hsa-miR-4763-5p 1 1 0
chr2:96595545|96601663 hsa-miR-889-5p 0 1 0
chr2:96595545|96601663 hsa-miR-3065-3p 0 1 0
chr2:96595545|96601663 hsa-miR-4687-5p 1 0 0
chr2:96595545|96601663 hsa-miR-6804-3p 1 0 0
chr2:96595545|96601663 hsa-miR-6871-3p 0 1 0
chr2:96595545|96601663 hsa-miR-4632-3p 1 0 0
chr2:96595545|96601663 hsa-miR-5088-3p 1 0 0
chr2:96595545|96601663 hsa-miR-3670 0 1 0
chr2:96595545|96601663 hsa-miR-6848-5p 1 0 0
chr2:96595545|96601663 hsa-miR-6773-5p 0 1 0
chr2:96595545|96601663 hsa-miR-6724-5p 0 1 0
chr2:96595545|96601663 hsa-miR-4691-5p 1 1 0
chr2:96595545|96601663 hsa-miR-7156-5p 1 0 0
chr2:96595545|96601663 hsa-miR-3681-3p 0 1 0
chr2:96595545|96601663 hsa-miR-190a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:96595545|96601663
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LSRAHHEAAITNLVRRTYHTASSGCWRQAL
Nucleotide Sequence CTGTCCAGGGCCCACCATGAGGCAGCCATCACCAACTTGGTAAGGAGGACATATCACACAGCATCTTCAGGGTGCTGGAGGCAGGCGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab