CircRNA Information

General Information
circRNA Basic Information
CircID chr3:100365388|100365558
Strand -
CircType exon
Host Gene ENSG00000154174.7;
Algorism CIRI2;
Sequence TTCCTTCAACAGCCACACCCACAACACCTAGACATGAAACAGATGTAACAAATAACAACACCACAAACAGAAATACTGATTTCCACCATTCAACACAGTTCATGACAGTGTCTTTAGGGTTCAGTTGAAGAGGGGGTAAACTTTTAAAAAGAGGGTCAGTCTGCTTTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:100365388|100365558 hsa-miR-504-5p 0 0 1
chr3:100365388|100365558 hsa-miR-504-3p 0 0 1
chr3:100365388|100365558 hsa-miR-561-5p 0 0 1
chr3:100365388|100365558 hsa-miR-561-3p 0 0 1
chr3:100365388|100365558 hsa-miR-609 0 0 1
chr3:100365388|100365558 hsa-miR-653-5p 0 0 1
chr3:100365388|100365558 hsa-miR-653-3p 0 0 1
chr3:100365388|100365558 hsa-miR-892a 0 0 1
chr3:100365388|100365558 hsa-miR-548n 0 0 1
chr3:100365388|100365558 hsa-miR-1267 0 0 1
chr3:100365388|100365558 hsa-miR-1252-5p 0 0 1
chr3:100365388|100365558 hsa-miR-1252-3p 0 0 1
chr3:100365388|100365558 hsa-miR-644 0 0 1
chr3:100365388|100365558 hsa-miR-601 1 0 0
chr3:100365388|100365558 hsa-miR-3153 0 1 0
chr3:100365388|100365558 hsa-miR-3166 1 0 0
chr3:100365388|100365558 hsa-miR-4296 1 0 0
chr3:100365388|100365558 hsa-miR-4322 1 0 0
chr3:100365388|100365558 hsa-miR-4440 1 0 0
chr3:100365388|100365558 hsa-miR-7702 1 0 0
chr3:100365388|100365558 hsa-miR-8080 0 1 0
chr3:100365388|100365558 hsa-miR-1273h-3p 1 0 0
chr3:100365388|100365558 hsa-miR-210-3p 1 0 0
chr3:100365388|100365558 hsa-miR-4687-3p 1 1 0
chr3:100365388|100365558 hsa-miR-8071 1 0 0
chr3:100365388|100365558 hsa-miR-6867-5p 1 0 0
chr3:100365388|100365558 hsa-miR-3064-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6741-5p 1 0 0
chr3:100365388|100365558 hsa-miR-4474-3p 0 1 0
chr3:100365388|100365558 hsa-miR-6759-5p 1 1 0
chr3:100365388|100365558 hsa-miR-6776-5p 1 0 0
chr3:100365388|100365558 hsa-miR-4728-3p 1 0 0
chr3:100365388|100365558 hsa-miR-6748-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6772-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6793-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6796-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6782-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6757-3p 1 0 0
chr3:100365388|100365558 hsa-miR-652-5p 0 1 0
chr3:100365388|100365558 hsa-miR-7154-5p 0 1 0
chr3:100365388|100365558 hsa-miR-6802-5p 1 0 0
chr3:100365388|100365558 hsa-miR-4640-3p 1 1 0
chr3:100365388|100365558 hsa-miR-4740-5p 1 1 0
chr3:100365388|100365558 hsa-miR-6825-3p 1 0 0
chr3:100365388|100365558 hsa-miR-4724-5p 0 1 0
chr3:100365388|100365558 hsa-miR-5088-3p 1 1 0
chr3:100365388|100365558 hsa-miR-6857-3p 1 0 0
chr3:100365388|100365558 hsa-miR-4750-3p 1 0 0
chr3:100365388|100365558 hsa-miR-6798-3p 0 1 0
chr3:100365388|100365558 hsa-miR-6515-3p 0 1 0
chr3:100365388|100365558 hsa-miR-4771 1 1 0
chr3:100365388|100365558 hsa-miR-6769b-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6752-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6803-5p 1 0 0
chr3:100365388|100365558 hsa-miR-7110-5p 1 0 0
chr3:100365388|100365558 hsa-miR-6751-5p 1 0 0
chr3:100365388|100365558 hsa-miR-4701-3p 1 0 0
chr3:100365388|100365558 hsa-miR-4747-5p 1 0 0
chr3:100365388|100365558 hsa-miR-193b-3p 1 0 0
chr3:100365388|100365558 hsa-miR-6855-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:100365388|100365558
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MVEISISVCGVVICYICFMSRCCGCGC
Nucleotide Sequence ATGGTGGAAATCAGTATTTCTGTTTGTGGTGTTGTTATTTGTTACATCTGTTTCATGTCTAGGTGTTGTGGGTGTGGCTGTTGA
CircID chr3:100365388|100365558
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MNPKDTVMNCVEWWKSVFLFVVLLFVTSVSCLGVVGVAVEG
Nucleotide Sequence CTGAACCCTAAAGACACTGTCATGAACTGTGTTGAATGGTGGAAATCAGTATTTCTGTTTGTGGTGTTGTTATTTGTTACATCTGTTTCATGTCTAGGTGTTGTGGGTGTGGCTGTTGAAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab