CircRNA Information

General Information
circRNA Basic Information
CircID chr3:112537867|112541842
Strand -
CircType exon
Host Gene ENSG00000144848.9;
Algorism CIRI2;
Sequence TATTTTCCTTGTATCTAGGGTAGCCTGAAAATAATAAAAGAGAAAAATTTACAACCATTAAATCGGTATGAATGTGACATTCTAGAAAACTTATTTTTTCCATTCTATATTTTGTTTTCTTAAGAGTAAATGAACTTGGAACTCAAAGCTACGTTTTATATGCTATAATCAATATGAACAAATTAGAATGTCTTTGAAAGATCAATATATTATTAGTAAGAACATGCATCCCCAAGTTCATCCATTAAAAATTAACTAAAGAAAACTCAATTTACAAACCTCATCTGTTTCCAACAATCCACTCTCTTCATATTCTTCCATATCTGCAGCTTCTCCTTCATCTTCATCTTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:112537867|112541842 hsa-miR-23a-5p 0 0 1
chr3:112537867|112541842 hsa-miR-23a-3p 0 0 1
chr3:112537867|112541842 hsa-miR-181c-5p 0 0 1
chr3:112537867|112541842 hsa-miR-181c-3p 0 0 1
chr3:112537867|112541842 hsa-miR-23b-5p 0 0 1
chr3:112537867|112541842 hsa-miR-23b-3p 0 0 1
chr3:112537867|112541842 hsa-miR-375-5p 0 0 1
chr3:112537867|112541842 hsa-miR-375-3p 0 0 1
chr3:112537867|112541842 hsa-miR-381-5p 0 0 1
chr3:112537867|112541842 hsa-miR-381-3p 0 0 1
chr3:112537867|112541842 hsa-miR-484 0 0 1
chr3:112537867|112541842 hsa-miR-181d-5p 0 0 1
chr3:112537867|112541842 hsa-miR-181d-3p 0 0 1
chr3:112537867|112541842 hsa-miR-570-5p 0 0 1
chr3:112537867|112541842 hsa-miR-570-3p 0 0 1
chr3:112537867|112541842 hsa-miR-579-5p 0 0 1
chr3:112537867|112541842 hsa-miR-579-3p 0 0 1
chr3:112537867|112541842 hsa-miR-607 0 0 1
chr3:112537867|112541842 hsa-miR-624-5p 0 0 1
chr3:112537867|112541842 hsa-miR-624-3p 0 0 1
chr3:112537867|112541842 hsa-miR-641 0 0 1
chr3:112537867|112541842 hsa-miR-300 0 0 1
chr3:112537867|112541842 hsa-miR-1206 0 0 1
chr3:112537867|112541842 hsa-miR-1255a 0 0 1
chr3:112537867|112541842 hsa-miR-1279 0 0 1
chr3:112537867|112541842 hsa-miR-1252-5p 0 0 1
chr3:112537867|112541842 hsa-miR-1252-3p 0 0 1
chr3:112537867|112541842 hsa-miR-576-5p 0 0 1
chr3:112537867|112541842 hsa-miR-518d-5p 0 0 1
chr3:112537867|112541842 hsa-miR-519b-5p 0 0 1
chr3:112537867|112541842 hsa-miR-519c-5p 0 0 1
chr3:112537867|112541842 hsa-miR-520c-5p 0 0 1
chr3:112537867|112541842 hsa-miR-485-3p 0 0 1
chr3:112537867|112541842 hsa-miR-513a-3p 0 0 1
chr3:112537867|112541842 hsa-miR-590-3p 0 0 1
chr3:112537867|112541842 hsa-miR-1255b 0 0 1
chr3:112537867|112541842 hsa-miR-7 0 0 1
chr3:112537867|112541842 hsa-miR-181a 0 0 1
chr3:112537867|112541842 hsa-miR-181b 0 0 1
chr3:112537867|112541842 hsa-miR-453 0 0 1
chr3:112537867|112541842 hsa-miR-526a 0 0 1
chr3:112537867|112541842 hsa-miR-765 1 0 0
chr3:112537867|112541842 hsa-miR-1290 1 0 0
chr3:112537867|112541842 hsa-miR-1268a 1 0 0
chr3:112537867|112541842 hsa-miR-1270 1 0 0
chr3:112537867|112541842 hsa-miR-3125 1 0 0
chr3:112537867|112541842 hsa-miR-3147 1 0 0
chr3:112537867|112541842 hsa-miR-3154 1 0 0
chr3:112537867|112541842 hsa-miR-3185 1 0 0
chr3:112537867|112541842 hsa-miR-4270 1 0 0
chr3:112537867|112541842 hsa-miR-4271 1 0 0
chr3:112537867|112541842 hsa-miR-3652 1 0 0
chr3:112537867|112541842 hsa-miR-3911 1 0 0
chr3:112537867|112541842 hsa-miR-3937 1 0 0
chr3:112537867|112541842 hsa-miR-1268b 1 0 0
chr3:112537867|112541842 hsa-miR-4434 1 0 0
chr3:112537867|112541842 hsa-miR-4476 1 0 0
chr3:112537867|112541842 hsa-miR-4481 1 0 0
chr3:112537867|112541842 hsa-miR-4510 1 0 0
chr3:112537867|112541842 hsa-miR-4533 1 0 0
chr3:112537867|112541842 hsa-miR-4534 1 0 0
chr3:112537867|112541842 hsa-miR-4644 1 0 0
chr3:112537867|112541842 hsa-miR-4657 1 0 0
chr3:112537867|112541842 hsa-miR-4688 1 0 0
chr3:112537867|112541842 hsa-miR-4689 1 0 0
chr3:112537867|112541842 hsa-miR-4739 1 0 0
chr3:112537867|112541842 hsa-miR-4784 1 0 0
chr3:112537867|112541842 hsa-miR-5192 1 0 0
chr3:112537867|112541842 hsa-miR-5703 1 0 0
chr3:112537867|112541842 hsa-miR-5739 1 0 0
chr3:112537867|112541842 hsa-miR-6088 1 0 0
chr3:112537867|112541842 hsa-miR-6127 1 0 0
chr3:112537867|112541842 hsa-miR-6129 1 0 0
chr3:112537867|112541842 hsa-miR-6130 1 0 0
chr3:112537867|112541842 hsa-miR-6133 1 0 0
chr3:112537867|112541842 hsa-miR-6863 1 0 0
chr3:112537867|112541842 hsa-miR-8056 1 0 0
chr3:112537867|112541842 hsa-miR-8085 1 0 0
chr3:112537867|112541842 hsa-miR-12115 1 0 0
chr3:112537867|112541842 hsa-miR-12118 1 0 0
chr3:112537867|112541842 hsa-miR-4433b-3p 1 0 0
chr3:112537867|112541842 hsa-miR-7106-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6894-5p 1 0 0
chr3:112537867|112541842 hsa-miR-4687-3p 1 0 0
chr3:112537867|112541842 hsa-miR-125a-3p 1 0 0
chr3:112537867|112541842 hsa-miR-3692-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6804-5p 1 0 0
chr3:112537867|112541842 hsa-miR-139-3p 1 0 0
chr3:112537867|112541842 hsa-miR-6833-5p 1 0 0
chr3:112537867|112541842 hsa-miR-5187-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6746-5p 1 0 0
chr3:112537867|112541842 hsa-miR-4709-3p 1 0 0
chr3:112537867|112541842 hsa-miR-7154-3p 1 0 0
chr3:112537867|112541842 hsa-miR-8069 1 0 0
chr3:112537867|112541842 hsa-miR-3605-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6871-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6793-5p 1 0 0
chr3:112537867|112541842 hsa-miR-486-3p 1 0 0
chr3:112537867|112541842 hsa-miR-6760-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6888-5p 1 0 0
chr3:112537867|112541842 hsa-miR-4693-3p 1 0 0
chr3:112537867|112541842 hsa-miR-30c-2-3p 1 0 0
chr3:112537867|112541842 hsa-miR-3691-5p 1 0 0
chr3:112537867|112541842 hsa-miR-877-5p 1 0 0
chr3:112537867|112541842 hsa-miR-3162-5p 1 0 0
chr3:112537867|112541842 hsa-miR-3158-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6878-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6864-5p 1 0 0
chr3:112537867|112541842 hsa-miR-875-3p 1 0 0
chr3:112537867|112541842 hsa-miR-11181-3p 1 0 0
chr3:112537867|112541842 hsa-miR-1249-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6788-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6780b-5p 1 0 0
chr3:112537867|112541842 hsa-miR-4745-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6858-5p 1 0 0
chr3:112537867|112541842 hsa-miR-4769-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6758-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6856-5p 1 0 0
chr3:112537867|112541842 hsa-miR-3679-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6876-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6891-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6750-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6849-5p 1 0 0
chr3:112537867|112541842 hsa-miR-6884-5p 1 0 0
chr3:112537867|112541842 hsa-miR-509-3-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:112537867|112541842
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MKIIKEKNLQPLNRYECDILENLFFPFYILFS
Nucleotide Sequence CTGAAAATAATAAAAGAGAAAAATTTACAACCATTAAATCGGTATGAATGTGACATTCTAGAAAACTTATTTTTTCCATTCTATATTTTGTTTTCTTAA
CircID chr3:112537867|112541842
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MKMKEKLQIWKNMKRVDCWKQMRFVN
Nucleotide Sequence ATGAAGATGAAGGAGAAGCTGCAGATATGGAAGAATATGAAGAGAGTGGATTGTTGGAAACAGATGAGGTTTGTAAATTGA
CircID chr3:112537867|112541842
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MNLGMHVLTNNILIFQRHSNLFILIIAYKT
Nucleotide Sequence ATGAACTTGGGGATGCATGTTCTTACTAATAATATATTGATCTTTCAAAGACATTCTAATTTGTTCATATTGATTATAGCATATAAAACGTAG
CircID chr3:112537867|112541842
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MEKISFLECHIHTDLMVVNFSLLLFSGYPRYKEN
Nucleotide Sequence ATGGAAAAAATAAGTTTTCTAGAATGTCACATTCATACCGATTTAATGGTTGTAAATTTTTCTCTTTTATTATTTTCAGGCTACCCTAGATACAAGGAAAAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab