CircRNA Information

General Information
circRNA Basic Information
CircID chr3:113746014|113746188
Strand +
CircType exon
Host Gene ENSG00000121579.11;
Algorism CIRI2;
Sequence CCGAGTGCACGTGTGGAGAAGCGGCGGCACAAGCGCGGCGGCGGGAGACACTCCCGCCCCCACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:113746014|113746188 hsa-miR-122-5p 0 0 1
chr3:113746014|113746188 hsa-miR-122-3p 0 0 1
chr3:113746014|113746188 hsa-miR-596 0 0 1
chr3:113746014|113746188 hsa-miR-612 1 0 1
chr3:113746014|113746188 hsa-miR-627-5p 0 0 1
chr3:113746014|113746188 hsa-miR-627-3p 0 0 1
chr3:113746014|113746188 hsa-miR-661 1 0 1
chr3:113746014|113746188 hsa-miR-891a-5p 0 0 1
chr3:113746014|113746188 hsa-miR-891a-3p 0 0 1
chr3:113746014|113746188 hsa-miR-541-5p 0 0 1
chr3:113746014|113746188 hsa-miR-541-3p 0 0 1
chr3:113746014|113746188 hsa-miR-920 1 0 1
chr3:113746014|113746188 hsa-miR-924 0 0 1
chr3:113746014|113746188 hsa-miR-654-5p 0 0 1
chr3:113746014|113746188 hsa-miR-1207-5p 1 0 1
chr3:113746014|113746188 hsa-miR-515-5p 0 0 1
chr3:113746014|113746188 hsa-miR-1285 0 0 1
chr3:113746014|113746188 hsa-miR-663a 1 0 0
chr3:113746014|113746188 hsa-miR-762 1 0 0
chr3:113746014|113746188 hsa-miR-1231 1 0 0
chr3:113746014|113746188 hsa-miR-3147 1 0 0
chr3:113746014|113746188 hsa-miR-3937 1 0 0
chr3:113746014|113746188 hsa-miR-4538 1 0 0
chr3:113746014|113746188 hsa-miR-4706 1 0 0
chr3:113746014|113746188 hsa-miR-6860 1 0 0
chr3:113746014|113746188 hsa-miR-6825-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6799-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6089 1 0 0
chr3:113746014|113746188 hsa-miR-6727-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6721-5p 1 0 0
chr3:113746014|113746188 hsa-miR-197-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6798-5p 1 0 0
chr3:113746014|113746188 hsa-miR-1226-5p 1 0 0
chr3:113746014|113746188 hsa-miR-1229-5p 1 0 0
chr3:113746014|113746188 hsa-miR-1908-5p 1 0 0
chr3:113746014|113746188 hsa-miR-1228-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6749-5p 1 0 0
chr3:113746014|113746188 hsa-miR-3648 1 0 0
chr3:113746014|113746188 hsa-miR-149-3p 1 0 0
chr3:113746014|113746188 hsa-miR-937-5p 1 0 0
chr3:113746014|113746188 hsa-miR-7112-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6746-3p 1 0 0
chr3:113746014|113746188 hsa-miR-4763-3p 1 0 0
chr3:113746014|113746188 hsa-miR-6787-5p 1 0 0
chr3:113746014|113746188 hsa-miR-7107-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6722-3p 1 0 0
chr3:113746014|113746188 hsa-miR-6774-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6808-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6879-5p 1 0 0
chr3:113746014|113746188 hsa-miR-3620-5p 1 0 0
chr3:113746014|113746188 hsa-miR-4728-5p 1 0 0
chr3:113746014|113746188 hsa-miR-5196-5p 1 0 0
chr3:113746014|113746188 hsa-miR-1237-5p 1 0 0
chr3:113746014|113746188 hsa-miR-4649-5p 1 0 0
chr3:113746014|113746188 hsa-miR-4745-5p 1 0 0
chr3:113746014|113746188 hsa-miR-4749-5p 1 0 0
chr3:113746014|113746188 hsa-miR-6729-5p 1 0 0
chr3:113746014|113746188 hsa-miR-3187-5p 1 0 0
chr3:113746014|113746188 hsa-miR-939-5p 1 0 0
chr3:113746014|113746188 hsa-miR-4646-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:113746014|113746188
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLAQLPAQARRPACGVEWPELRVRR
Nucleotide Sequence TTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGA
CircID chr3:113746014|113746188
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MGRELCEQRRPRESSEGLSLVGAGVSPAAALVPPLLHTCTR
Nucleotide Sequence CTGGGCAGGGAGCTGTGCGAGCAACGAAGGCCGCGAGAGTCGAGTGAGGGCTTGAGTCTGGTGGGGGCGGGAGTGTCTCCCGCCGCCGCGCTTGTGCCGCCGCTTCTCCACACGTGCACTCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab