CircRNA Information

General Information
circRNA Basic Information
CircID chr3:11556380|11556571
Strand -
CircType exon
Host Gene ENSG00000197548.11;
Algorism CIRI2;
Sequence CCGGCCGCCAGCACCGCCGACCCCTCCCAGAGTGACGCCCTTGTTCACTGACAAAGAGACCTGTCCCAGGAGTGTCCTCCACCGAGCCGGTCAGCTGTGGGTGGTTTTCCTGTTACGACGCTCAGTAGCCTGTAGCAATAACAAACTCGTGGCTATGAATGCAGATGCAGTGTTCTCATAGAATAACTGTTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:11556380|11556571 hsa-miR-217-5p 0 0 1
chr3:11556380|11556571 hsa-miR-217-3p 0 0 1
chr3:11556380|11556571 hsa-miR-221-5p 0 0 1
chr3:11556380|11556571 hsa-miR-221-3p 0 0 1
chr3:11556380|11556571 hsa-miR-222-5p 0 0 1
chr3:11556380|11556571 hsa-miR-222-3p 0 0 1
chr3:11556380|11556571 hsa-miR-223-5p 0 0 1
chr3:11556380|11556571 hsa-miR-223-3p 0 0 1
chr3:11556380|11556571 hsa-miR-137-5p 0 0 1
chr3:11556380|11556571 hsa-miR-137-3p 0 0 1
chr3:11556380|11556571 hsa-miR-141-5p 0 0 1
chr3:11556380|11556571 hsa-miR-141-3p 0 0 1
chr3:11556380|11556571 hsa-miR-146a-5p 0 0 1
chr3:11556380|11556571 hsa-miR-146a-3p 0 0 1
chr3:11556380|11556571 hsa-miR-200a-5p 0 0 1
chr3:11556380|11556571 hsa-miR-200a-3p 0 0 1
chr3:11556380|11556571 hsa-miR-326 0 0 1
chr3:11556380|11556571 hsa-miR-376b-5p 0 0 1
chr3:11556380|11556571 hsa-miR-376b-3p 0 0 1
chr3:11556380|11556571 hsa-miR-589-5p 0 0 1
chr3:11556380|11556571 hsa-miR-589-3p 0 0 1
chr3:11556380|11556571 hsa-miR-668-5p 0 0 1
chr3:11556380|11556571 hsa-miR-668-3p 0 0 1
chr3:11556380|11556571 hsa-miR-765 0 0 1
chr3:11556380|11556571 hsa-miR-1250-5p 0 0 1
chr3:11556380|11556571 hsa-miR-1250-3p 0 0 1
chr3:11556380|11556571 hsa-miR-1197 0 0 1
chr3:11556380|11556571 hsa-miR-423-3p 0 1 1
chr3:11556380|11556571 hsa-miR-483-3p 0 0 1
chr3:11556380|11556571 hsa-miR-330-5p 0 0 1
chr3:11556380|11556571 hsa-miR-1302 0 0 1
chr3:11556380|11556571 hsa-miR-146b-5p 0 0 1
chr3:11556380|11556571 hsa-miR-886-5p 0 0 1
chr3:11556380|11556571 hsa-miR-376a 0 0 1
chr3:11556380|11556571 hsa-miR-194 0 0 1
chr3:11556380|11556571 hsa-miR-602 1 0 0
chr3:11556380|11556571 hsa-miR-1268a 1 0 0
chr3:11556380|11556571 hsa-miR-3185 1 0 0
chr3:11556380|11556571 hsa-miR-4298 1 1 0
chr3:11556380|11556571 hsa-miR-1268b 1 0 0
chr3:11556380|11556571 hsa-miR-4507 1 0 0
chr3:11556380|11556571 hsa-miR-4651 1 0 0
chr3:11556380|11556571 hsa-miR-4721 1 0 0
chr3:11556380|11556571 hsa-miR-5090 1 0 0
chr3:11556380|11556571 hsa-miR-7704 1 1 0
chr3:11556380|11556571 hsa-miR-8089 1 0 0
chr3:11556380|11556571 hsa-miR-6799-5p 1 0 0
chr3:11556380|11556571 hsa-miR-3192-5p 0 1 0
chr3:11556380|11556571 hsa-miR-6880-5p 0 1 0
chr3:11556380|11556571 hsa-miR-7847-3p 0 1 0
chr3:11556380|11556571 hsa-miR-7154-3p 0 1 0
chr3:11556380|11556571 hsa-miR-6721-5p 1 0 0
chr3:11556380|11556571 hsa-miR-7845-5p 1 0 0
chr3:11556380|11556571 hsa-miR-185-3p 1 0 0
chr3:11556380|11556571 hsa-miR-6732-5p 1 0 0
chr3:11556380|11556571 hsa-miR-1343-3p 0 1 0
chr3:11556380|11556571 hsa-miR-615-5p 1 0 0
chr3:11556380|11556571 hsa-miR-4640-5p 1 0 0
chr3:11556380|11556571 hsa-miR-1228-5p 1 0 0
chr3:11556380|11556571 hsa-miR-92b-5p 1 1 0
chr3:11556380|11556571 hsa-miR-149-3p 1 1 0
chr3:11556380|11556571 hsa-miR-4746-3p 0 1 0
chr3:11556380|11556571 hsa-miR-4763-3p 1 0 0
chr3:11556380|11556571 hsa-miR-6787-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6893-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6737-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6743-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6756-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6803-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6722-3p 1 0 0
chr3:11556380|11556571 hsa-miR-6751-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6779-5p 1 1 0
chr3:11556380|11556571 hsa-miR-6780a-5p 1 0 0
chr3:11556380|11556571 hsa-miR-6879-5p 1 0 0
chr3:11556380|11556571 hsa-miR-4728-5p 1 0 0
chr3:11556380|11556571 hsa-miR-5196-5p 1 0 0
chr3:11556380|11556571 hsa-miR-4725-3p 1 0 0
chr3:11556380|11556571 hsa-miR-6883-5p 1 0 0
chr3:11556380|11556571 hsa-miR-1914-3p 1 1 0
chr3:11556380|11556571 hsa-miR-7151-3p 0 1 0
chr3:11556380|11556571 hsa-miR-6785-5p 1 1 0
chr3:11556380|11556571 hsa-miR-6783-3p 0 1 0
chr3:11556380|11556571 hsa-miR-6807-3p 0 1 0
chr3:11556380|11556571 hsa-miR-548aa 0 1 0
chr3:11556380|11556571 hsa-miR-548t-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:11556380|11556571
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MFTDKETCPRSVLHRAGQLWVVFLLRRSVACSNNKLVAMNADAVFS
Nucleotide Sequence TTGTTCACTGACAAAGAGACCTGTCCCAGGAGTGTCCTCCACCGAGCCGGTCAGCTGTGGGTGGTTTTCCTGTTACGACGCTCAGTAGCCTGTAGCAATAACAAACTCGTGGCTATGAATGCAGATGCAGTGTTCTCATAG
CircID chr3:11556380|11556571
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MTKRPVPGVSSTEPVSCGWFSCYDAQ
Nucleotide Sequence CTGACAAAGAGACCTGTCCCAGGAGTGTCCTCCACCGAGCCGGTCAGCTGTGGGTGGTTTTCCTGTTACGACGCTCAGTAG
CircID chr3:11556380|11556571
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSVVTGKPPTADRLGGGHSWDRSLCQ
Nucleotide Sequence CTGAGCGTCGTAACAGGAAAACCACCCACAGCTGACCGGCTCGGTGGAGGACACTCCTGGGACAGGTCTCTTTGTCAGTGA
CircID chr3:11556380|11556571
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MTGSVEDTPGTGLFVSEQGRHSGRGRRCWRP
Nucleotide Sequence CTGACCGGCTCGGTGGAGGACACTCCTGGGACAGGTCTCTTTGTCAGTGAACAAGGGCGTCACTCTGGGAGGGGTCGGCGGTGCTGGCGGCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab