CircRNA Information

General Information
circRNA Basic Information
CircID chr3:11556843|11557043
Strand +
CircType exon
Host Gene ENSG00000197548.11;
Algorism CIRI2;
Sequence CTGCAAGGCTTTGTGGACTCTGCACACCGTATGACCCCCGGTTTTACAGTTTTTAGCTGTTGAATTTTGGAAATTGGCACTGGGTGAAAAGGTCGGAGGACTGGCTCTTGTAGTCACAGAGTGGCTGCAGGCCTTTGAAAAGTGGAGGAAAGAAAAGCCCTTCTCCTTGCCCCGCACACATTTCACTCCCACTGTACTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:11556843|11557043 hsa-miR-134-5p 0 0 1
chr3:11556843|11557043 hsa-miR-134-3p 0 0 1
chr3:11556843|11557043 hsa-miR-335-5p 0 0 1
chr3:11556843|11557043 hsa-miR-335-3p 0 0 1
chr3:11556843|11557043 hsa-miR-575 0 0 1
chr3:11556843|11557043 hsa-miR-607 0 0 1
chr3:11556843|11557043 hsa-miR-421 0 0 1
chr3:11556843|11557043 hsa-miR-147b-5p 0 0 1
chr3:11556843|11557043 hsa-miR-147b-3p 0 0 1
chr3:11556843|11557043 hsa-miR-744-5p 0 0 1
chr3:11556843|11557043 hsa-miR-744-3p 0 0 1
chr3:11556843|11557043 hsa-miR-1238-5p 0 0 1
chr3:11556843|11557043 hsa-miR-1238-3p 0 0 1
chr3:11556843|11557043 hsa-miR-548e-5p 0 0 1
chr3:11556843|11557043 hsa-miR-548e-3p 0 0 1
chr3:11556843|11557043 hsa-miR-1305 0 0 1
chr3:11556843|11557043 hsa-miR-548g-5p 0 0 1
chr3:11556843|11557043 hsa-miR-548g-3p 0 0 1
chr3:11556843|11557043 hsa-miR-1825 0 0 1
chr3:11556843|11557043 hsa-miR-770-5p 0 0 1
chr3:11556843|11557043 hsa-miR-1184 0 1 1
chr3:11556843|11557043 hsa-miR-548a-3p 0 0 1
chr3:11556843|11557043 hsa-miR-548d-3p 0 0 1
chr3:11556843|11557043 hsa-miR-548f 0 0 1
chr3:11556843|11557043 hsa-miR-203 0 0 1
chr3:11556843|11557043 hsa-miR-3147 1 0 0
chr3:11556843|11557043 hsa-miR-3909 1 0 0
chr3:11556843|11557043 hsa-miR-4428 0 1 0
chr3:11556843|11557043 hsa-miR-4516 0 1 0
chr3:11556843|11557043 hsa-miR-4669 1 0 0
chr3:11556843|11557043 hsa-miR-4706 1 0 0
chr3:11556843|11557043 hsa-miR-5090 1 1 0
chr3:11556843|11557043 hsa-miR-6090 1 0 0
chr3:11556843|11557043 hsa-miR-6809-5p 0 1 0
chr3:11556843|11557043 hsa-miR-6867-5p 1 1 0
chr3:11556843|11557043 hsa-miR-6746-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6727-5p 1 0 0
chr3:11556843|11557043 hsa-miR-4655-5p 0 1 0
chr3:11556843|11557043 hsa-miR-3151-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6796-5p 1 0 0
chr3:11556843|11557043 hsa-miR-185-3p 1 0 0
chr3:11556843|11557043 hsa-miR-6881-5p 1 1 0
chr3:11556843|11557043 hsa-miR-4436b-5p 0 1 0
chr3:11556843|11557043 hsa-miR-4691-3p 0 1 0
chr3:11556843|11557043 hsa-miR-149-3p 1 0 0
chr3:11556843|11557043 hsa-miR-7156-3p 0 1 0
chr3:11556843|11557043 hsa-miR-3678-3p 1 1 0
chr3:11556843|11557043 hsa-miR-6768-3p 0 1 0
chr3:11556843|11557043 hsa-miR-1207-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6778-5p 0 1 0
chr3:11556843|11557043 hsa-miR-6812-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6775-5p 1 1 0
chr3:11556843|11557043 hsa-miR-6752-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6756-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6803-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6751-5p 0 1 0
chr3:11556843|11557043 hsa-miR-6808-5p 1 0 0
chr3:11556843|11557043 hsa-miR-10396a-5p 1 1 0
chr3:11556843|11557043 hsa-miR-10396b-5p 1 0 0
chr3:11556843|11557043 hsa-miR-328-5p 1 0 0
chr3:11556843|11557043 hsa-miR-4649-5p 1 1 0
chr3:11556843|11557043 hsa-miR-4749-5p 1 0 0
chr3:11556843|11557043 hsa-miR-6729-5p 1 0 0
chr3:11556843|11557043 hsa-miR-675-5p 1 0 0
chr3:11556843|11557043 hsa-miR-4758-5p 1 0 0
chr3:11556843|11557043 hsa-miR-3085-5p 1 0 0
chr3:11556843|11557043 hsa-miR-381-3p 0 1 0
chr3:11556843|11557043 hsa-miR-4712-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:11556843|11557043
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MALGEKVGGLALVVTEWLQAFEKWRKEKPFSLPRTHFTPTVL
Nucleotide Sequence TTGGCACTGGGTGAAAAGGTCGGAGGACTGGCTCTTGTAGTCACAGAGTGGCTGCAGGCCTTTGAAAAGTGGAGGAAAGAAAAGCCCTTCTCCTTGCCCCGCACACATTTCACTCCCACTGTACTG
CircID chr3:11556843|11557043
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MCAGQGEGLFFPPLFKGLQPLCDYKSQSSDLFTQCQFPKFNS
Nucleotide Sequence ATGTGTGCGGGGCAAGGAGAAGGGCTTTTCTTTCCTCCACTTTTCAAAGGCCTGCAGCCACTCTGTGACTACAAGAGCCAGTCCTCCGACCTTTTCACCCAGTGCCAATTTCCAAAATTCAACAGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab