CircRNA Information

General Information
circRNA Basic Information
CircID chr3:121695402|121695521
Strand -
CircType exon
Host Gene ENSG00000173230.14;
Algorism CIRI2;
Sequence CTCTGCCCTAAGCCGGTCATTCTCTTCTTCCAGCTCTAGGATTTTCTGCTGTTTAGATTTAGCAAACTTTCTCATCTTTTCTTTCATTTCCTCCATTTCTTGCTCAGCTTCCTGCAACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:121695402|121695521 hsa-miR-539-5p 0 0 1
chr3:121695402|121695521 hsa-miR-539-3p 0 0 1
chr3:121695402|121695521 hsa-miR-561-5p 0 0 1
chr3:121695402|121695521 hsa-miR-561-3p 0 0 1
chr3:121695402|121695521 hsa-miR-1296-5p 0 0 1
chr3:121695402|121695521 hsa-miR-1296-3p 0 0 1
chr3:121695402|121695521 hsa-miR-765 1 1 1
chr3:121695402|121695521 hsa-miR-922 0 1 1
chr3:121695402|121695521 hsa-miR-1286 0 0 1
chr3:121695402|121695521 hsa-miR-7 0 0 1
chr3:121695402|121695521 hsa-miR-762 1 0 0
chr3:121695402|121695521 hsa-miR-665 1 0 0
chr3:121695402|121695521 hsa-miR-3185 0 1 0
chr3:121695402|121695521 hsa-miR-4270 1 0 0
chr3:121695402|121695521 hsa-miR-3916 1 0 0
chr3:121695402|121695521 hsa-miR-3937 1 0 0
chr3:121695402|121695521 hsa-miR-4478 1 0 0
chr3:121695402|121695521 hsa-miR-4487 1 1 0
chr3:121695402|121695521 hsa-miR-4496 1 0 0
chr3:121695402|121695521 hsa-miR-1587 1 0 0
chr3:121695402|121695521 hsa-miR-4739 1 0 0
chr3:121695402|121695521 hsa-miR-4784 1 0 0
chr3:121695402|121695521 hsa-miR-5093 1 0 0
chr3:121695402|121695521 hsa-miR-6165 1 0 0
chr3:121695402|121695521 hsa-miR-6860 1 0 0
chr3:121695402|121695521 hsa-miR-8060 1 0 0
chr3:121695402|121695521 hsa-miR-671-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6894-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6799-5p 1 0 0
chr3:121695402|121695521 hsa-miR-766-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6515-5p 1 1 0
chr3:121695402|121695521 hsa-miR-6880-5p 1 0 0
chr3:121695402|121695521 hsa-miR-7847-3p 1 0 0
chr3:121695402|121695521 hsa-miR-4695-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6746-5p 1 0 0
chr3:121695402|121695521 hsa-miR-4722-5p 1 1 0
chr3:121695402|121695521 hsa-miR-6716-5p 1 1 0
chr3:121695402|121695521 hsa-miR-6760-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6874-5p 0 1 0
chr3:121695402|121695521 hsa-miR-4732-5p 1 1 0
chr3:121695402|121695521 hsa-miR-1207-5p 1 0 0
chr3:121695402|121695521 hsa-miR-5001-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6754-5p 1 0 0
chr3:121695402|121695521 hsa-miR-1249-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6788-5p 0 1 0
chr3:121695402|121695521 hsa-miR-6797-5p 1 0 0
chr3:121695402|121695521 hsa-miR-3620-5p 1 0 0
chr3:121695402|121695521 hsa-miR-4685-5p 1 0 0
chr3:121695402|121695521 hsa-miR-4726-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6735-5p 0 1 0
chr3:121695402|121695521 hsa-miR-6858-5p 1 0 0
chr3:121695402|121695521 hsa-miR-4436b-3p 1 0 0
chr3:121695402|121695521 hsa-miR-7843-5p 0 1 0
chr3:121695402|121695521 hsa-miR-3173-3p 1 0 0
chr3:121695402|121695521 hsa-miR-3679-5p 1 0 0
chr3:121695402|121695521 hsa-miR-4716-3p 1 0 0
chr3:121695402|121695521 hsa-miR-5591-5p 1 0 0
chr3:121695402|121695521 hsa-miR-6884-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:121695402|121695521
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLFRFSKLSHLFFHFLHFLLSFLQL
Nucleotide Sequence CTGCTGTTTAGATTTAGCAAACTTTCTCATCTTTTCTTTCATTTCCTCCATTTCTTGCTCAGCTTCCTGCAACTG
CircID chr3:121695402|121695521
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAE
Nucleotide Sequence TTGCAGGAAGCTGAGCAAGAAATGGAGGAAATGAAAGAAAAGATGAGAAAGTTTGCTAAATCTAAACAGCAGAAAATCCTAGAGCTGGAAGAAGAGAATGACCGGCTTAGGGCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab