CircRNA Information

General Information
circRNA Basic Information
CircID chr3:122572906|122573121
Strand +
CircType exon
Host Gene ENSG00000163840.8;
Algorism CIRI2;
Sequence CTCTCTCTCTCACTTCCTCTCTGTCATTTGATTTCTGCACACACTGGCTGCCCTTTGCTATGAATGGAAGCAGCCTGAGGCTTTCACCGGATGCCCAACCTTCTAGCCAGCAAAATTGTGAGCCAAACAAACCTTTTTCTTTATCAATTACCCAGTCTCAGGTGTTCTTTTATAGCAACACAAACAGACTAAGACAGGCACCAACTATATACTAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:122572906|122573121 hsa-miR-186-5p 0 0 1
chr3:122572906|122573121 hsa-miR-186-3p 0 0 1
chr3:122572906|122573121 hsa-miR-376b-5p 0 0 1
chr3:122572906|122573121 hsa-miR-376b-3p 0 0 1
chr3:122572906|122573121 hsa-miR-484 0 0 1
chr3:122572906|122573121 hsa-miR-555 0 0 1
chr3:122572906|122573121 hsa-miR-575 0 1 1
chr3:122572906|122573121 hsa-miR-599 0 0 1
chr3:122572906|122573121 hsa-miR-298 1 0 1
chr3:122572906|122573121 hsa-miR-548p 0 0 1
chr3:122572906|122573121 hsa-miR-199a-5p 0 0 1
chr3:122572906|122573121 hsa-miR-199b-5p 0 0 1
chr3:122572906|122573121 hsa-miR-516a-3p 0 0 1
chr3:122572906|122573121 hsa-miR-105 0 0 1
chr3:122572906|122573121 hsa-miR-550 0 0 1
chr3:122572906|122573121 hsa-miR-24 0 0 1
chr3:122572906|122573121 hsa-miR-376a 0 0 1
chr3:122572906|122573121 hsa-miR-768-3p 0 0 1
chr3:122572906|122573121 hsa-miR-3125 0 1 0
chr3:122572906|122573121 hsa-miR-3147 0 1 0
chr3:122572906|122573121 hsa-miR-4270 1 0 0
chr3:122572906|122573121 hsa-miR-3652 1 0 0
chr3:122572906|122573121 hsa-miR-3937 1 0 0
chr3:122572906|122573121 hsa-miR-4462 1 0 0
chr3:122572906|122573121 hsa-miR-4490 1 0 0
chr3:122572906|122573121 hsa-miR-4507 1 0 0
chr3:122572906|122573121 hsa-miR-4669 1 0 0
chr3:122572906|122573121 hsa-miR-4688 1 0 0
chr3:122572906|122573121 hsa-miR-4739 1 0 0
chr3:122572906|122573121 hsa-miR-5087 1 0 0
chr3:122572906|122573121 hsa-miR-5090 1 0 0
chr3:122572906|122573121 hsa-miR-5739 1 0 0
chr3:122572906|122573121 hsa-miR-6069 1 0 0
chr3:122572906|122573121 hsa-miR-6076 1 0 0
chr3:122572906|122573121 hsa-miR-6088 1 0 0
chr3:122572906|122573121 hsa-miR-6133 1 0 0
chr3:122572906|122573121 hsa-miR-8085 1 0 0
chr3:122572906|122573121 hsa-miR-12120 0 1 0
chr3:122572906|122573121 hsa-miR-12135 0 1 0
chr3:122572906|122573121 hsa-miR-214-5p 0 1 0
chr3:122572906|122573121 hsa-miR-92a-1-5p 0 1 0
chr3:122572906|122573121 hsa-miR-6734-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6861-5p 1 0 0
chr3:122572906|122573121 hsa-miR-4687-3p 1 0 0
chr3:122572906|122573121 hsa-miR-7847-3p 1 0 0
chr3:122572906|122573121 hsa-miR-6867-5p 1 1 0
chr3:122572906|122573121 hsa-miR-6762-3p 1 0 0
chr3:122572906|122573121 hsa-miR-7845-5p 1 0 0
chr3:122572906|122573121 hsa-miR-659-3p 1 0 0
chr3:122572906|122573121 hsa-miR-6829-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6760-5p 1 0 0
chr3:122572906|122573121 hsa-miR-5006-5p 1 0 0
chr3:122572906|122573121 hsa-miR-7109-3p 0 1 0
chr3:122572906|122573121 hsa-miR-1229-5p 1 0 0
chr3:122572906|122573121 hsa-miR-885-3p 1 0 0
chr3:122572906|122573121 hsa-miR-296-3p 1 0 0
chr3:122572906|122573121 hsa-miR-6847-5p 1 0 0
chr3:122572906|122573121 hsa-miR-7113-5p 1 0 0
chr3:122572906|122573121 hsa-miR-483-5p 1 0 0
chr3:122572906|122573121 hsa-miR-511-3p 1 0 0
chr3:122572906|122573121 hsa-miR-6754-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6756-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6879-5p 1 1 0
chr3:122572906|122573121 hsa-miR-4632-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6511b-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6758-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6856-5p 1 1 0
chr3:122572906|122573121 hsa-miR-9851-5p 1 0 0
chr3:122572906|122573121 hsa-miR-6529-5p 1 1 0
chr3:122572906|122573121 hsa-miR-4676-5p 1 0 0
chr3:122572906|122573121 hsa-miR-340-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:122572906|122573121
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MPNLLASKIVSQTNLFLYQLPSLRCSFIATQTD
Nucleotide Sequence ATGCCCAACCTTCTAGCCAGCAAAATTGTGAGCCAAACAAACCTTTTTCTTTATCAATTACCCAGTCTCAGGTGTTCTTTTATAGCAACACAAACAGACTAA
CircID chr3:122572906|122573121
ORF Type ORF2
Protein Length 64
Nucleotide Length 195
Protein Sequence MSFDFCTHWLPFAMNGSSLRLSPDAQPSSQQNCEPNKPFSLSITQSQVFFYSNTNRLRQAPTIY
Nucleotide Sequence CTGTCATTTGATTTCTGCACACACTGGCTGCCCTTTGCTATGAATGGAAGCAGCCTGAGGCTTTCACCGGATGCCCAACCTTCTAGCCAGCAAAATTGTGAGCCAAACAAACCTTTTTCTTTATCAATTACCCAGTCTCAGGTGTTCTTTTATAGCAACACAAACAGACTAAGACAGGCACCAACTATATACTAG
CircID chr3:122572906|122573121
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MFGSQFCWLEGWASGESLRLLPFIAKGSQCVQKSNDREEVRER
Nucleotide Sequence TTGTTTGGCTCACAATTTTGCTGGCTAGAAGGTTGGGCATCCGGTGAAAGCCTCAGGCTGCTTCCATTCATAGCAAAGGGCAGCCAGTGTGTGCAGAAATCAAATGACAGAGAGGAAGTGAGAGAGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab