CircRNA Information

General Information
circRNA Basic Information
CircID chr3:124905767|124905980
Strand +
CircType exon
Host Gene ENSG00000173702.6;
Algorism CIRI2;
Sequence CTGGTAGAAGGAAGAGAGGCAAAGGAAACTGGGTGGGGAGGATCAATTAGAGAGGAGGCACCTGGGATCCACCTTCTTCCTTAGGTCCCCTCCTCCATCAGCAAAGGAGCACTTCTCTAATCATGCCCTCCCGAAGACTGGCTGGGAGAAGGTTTAAAAACAAAAAATCCAGGAGTAAGAGCCTTAGGTCAGTTTGAAATTGGAGACAAACTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:124905767|124905980 hsa-miR-192-5p 0 0 1
chr3:124905767|124905980 hsa-miR-192-3p 0 0 1
chr3:124905767|124905980 hsa-miR-215-5p 0 0 1
chr3:124905767|124905980 hsa-miR-215-3p 0 0 1
chr3:124905767|124905980 hsa-miR-150-5p 0 0 1
chr3:124905767|124905980 hsa-miR-150-3p 0 0 1
chr3:124905767|124905980 hsa-miR-302a-5p 0 0 1
chr3:124905767|124905980 hsa-miR-302a-3p 0 0 1
chr3:124905767|124905980 hsa-miR-302b-5p 0 0 1
chr3:124905767|124905980 hsa-miR-302b-3p 0 0 1
chr3:124905767|124905980 hsa-miR-302c-5p 0 0 1
chr3:124905767|124905980 hsa-miR-302c-3p 0 0 1
chr3:124905767|124905980 hsa-miR-302d-5p 0 0 1
chr3:124905767|124905980 hsa-miR-302d-3p 0 0 1
chr3:124905767|124905980 hsa-miR-372-5p 0 0 1
chr3:124905767|124905980 hsa-miR-372-3p 0 0 1
chr3:124905767|124905980 hsa-miR-373-5p 0 0 1
chr3:124905767|124905980 hsa-miR-373-3p 0 0 1
chr3:124905767|124905980 hsa-miR-520e-5p 0 0 1
chr3:124905767|124905980 hsa-miR-520e-3p 0 0 1
chr3:124905767|124905980 hsa-miR-520b-5p 0 0 1
chr3:124905767|124905980 hsa-miR-520b-3p 0 0 1
chr3:124905767|124905980 hsa-miR-575 0 0 1
chr3:124905767|124905980 hsa-miR-607 0 0 1
chr3:124905767|124905980 hsa-miR-640 0 0 1
chr3:124905767|124905980 hsa-miR-765 0 0 1
chr3:124905767|124905980 hsa-miR-1236-5p 0 0 1
chr3:124905767|124905980 hsa-miR-1236-3p 0 0 1
chr3:124905767|124905980 hsa-miR-1237-5p 0 0 1
chr3:124905767|124905980 hsa-miR-1237-3p 0 0 1
chr3:124905767|124905980 hsa-miR-1290 0 0 1
chr3:124905767|124905980 hsa-miR-1303 0 0 1
chr3:124905767|124905980 hsa-miR-1248 0 0 1
chr3:124905767|124905980 hsa-miR-302e 0 0 1
chr3:124905767|124905980 hsa-miR-129-5p 0 0 1
chr3:124905767|124905980 hsa-miR-532-3p 0 0 1
chr3:124905767|124905980 hsa-miR-628-5p 0 0 1
chr3:124905767|124905980 hsa-miR-520d-3p 0 1 1
chr3:124905767|124905980 hsa-miR-876-5p 0 0 1
chr3:124905767|124905980 hsa-miR-520a-3p 0 1 1
chr3:124905767|124905980 hsa-miR-520c-3p 0 1 1
chr3:124905767|124905980 hsa-miR-515-5p 0 0 1
chr3:124905767|124905980 hsa-miR-133b 0 1 0
chr3:124905767|124905980 hsa-miR-492 0 1 0
chr3:124905767|124905980 hsa-miR-636 1 0 0
chr3:124905767|124905980 hsa-miR-764 1 1 0
chr3:124905767|124905980 hsa-miR-3132 1 0 0
chr3:124905767|124905980 hsa-miR-3165 0 1 0
chr3:124905767|124905980 hsa-miR-3183 0 1 0
chr3:124905767|124905980 hsa-miR-3185 0 1 0
chr3:124905767|124905980 hsa-miR-3649 0 1 0
chr3:124905767|124905980 hsa-miR-3915 0 1 0
chr3:124905767|124905980 hsa-miR-4448 0 1 0
chr3:124905767|124905980 hsa-miR-4521 0 1 0
chr3:124905767|124905980 hsa-miR-4534 1 1 0
chr3:124905767|124905980 hsa-miR-5193 1 1 0
chr3:124905767|124905980 hsa-miR-7977 0 1 0
chr3:124905767|124905980 hsa-miR-8075 0 1 0
chr3:124905767|124905980 hsa-miR-8082 0 1 0
chr3:124905767|124905980 hsa-miR-12118 0 1 0
chr3:124905767|124905980 hsa-miR-6749-3p 0 1 0
chr3:124905767|124905980 hsa-miR-18a-3p 1 0 0
chr3:124905767|124905980 hsa-miR-4726-3p 0 1 0
chr3:124905767|124905980 hsa-miR-7106-5p 1 1 0
chr3:124905767|124905980 hsa-miR-6822-3p 1 0 0
chr3:124905767|124905980 hsa-miR-6728-5p 1 0 0
chr3:124905767|124905980 hsa-miR-877-3p 1 0 0
chr3:124905767|124905980 hsa-miR-2467-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6760-5p 1 1 0
chr3:124905767|124905980 hsa-miR-3194-5p 1 0 0
chr3:124905767|124905980 hsa-miR-4713-5p 0 1 0
chr3:124905767|124905980 hsa-miR-6786-5p 1 0 0
chr3:124905767|124905980 hsa-miR-1226-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6771-5p 1 1 0
chr3:124905767|124905980 hsa-miR-6878-3p 1 0 0
chr3:124905767|124905980 hsa-miR-7111-3p 1 1 0
chr3:124905767|124905980 hsa-miR-149-3p 1 0 0
chr3:124905767|124905980 hsa-miR-6830-5p 0 1 0
chr3:124905767|124905980 hsa-miR-6825-3p 1 0 0
chr3:124905767|124905980 hsa-miR-4646-3p 1 0 0
chr3:124905767|124905980 hsa-miR-211-5p 1 0 0
chr3:124905767|124905980 hsa-miR-4695-3p 0 1 0
chr3:124905767|124905980 hsa-miR-5571-3p 0 1 0
chr3:124905767|124905980 hsa-miR-1224-3p 1 0 0
chr3:124905767|124905980 hsa-miR-328-3p 1 0 0
chr3:124905767|124905980 hsa-miR-4649-3p 1 0 0
chr3:124905767|124905980 hsa-miR-6880-3p 1 0 0
chr3:124905767|124905980 hsa-miR-3144-5p 0 1 0
chr3:124905767|124905980 hsa-miR-3152-5p 0 1 0
chr3:124905767|124905980 hsa-miR-133a-3p 0 1 0
chr3:124905767|124905980 hsa-miR-6778-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6775-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6851-5p 0 1 0
chr3:124905767|124905980 hsa-miR-11181-3p 0 1 0
chr3:124905767|124905980 hsa-miR-320a-5p 0 1 0
chr3:124905767|124905980 hsa-miR-4728-5p 1 1 0
chr3:124905767|124905980 hsa-miR-6862-5p 0 1 0
chr3:124905767|124905980 hsa-miR-328-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6795-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6883-5p 1 1 0
chr3:124905767|124905980 hsa-miR-6887-5p 1 0 0
chr3:124905767|124905980 hsa-miR-939-5p 1 0 0
chr3:124905767|124905980 hsa-miR-6785-5p 1 1 0
chr3:124905767|124905980 hsa-miR-6862-3p 1 1 0
chr3:124905767|124905980 hsa-miR-3130-5p 0 1 0
chr3:124905767|124905980 hsa-miR-4723-3p 1 1 0
chr3:124905767|124905980 hsa-miR-6769b-3p 1 0 0
chr3:124905767|124905980 hsa-miR-519e-3p 0 1 0
chr3:124905767|124905980 hsa-miR-3121-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:124905767|124905980
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence LVEGREAKETGWGGSIREEAPGIHLLP
Nucleotide Sequence CTGGTAGAAGGAAGAGAGGCAAAGGAAACTGGGTGGGGAGGATCAATTAGAGAGGAGGCACCTGGGATCCACCTTCTTCCTTAG
CircID chr3:124905767|124905980
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MGGEDQLERRHLGSTFFLRSPPPSAKEHFSNHALPKTGWEKV
Nucleotide Sequence CTGGGTGGGGAGGATCAATTAGAGAGGAGGCACCTGGGATCCACCTTCTTCCTTAGGTCCCCTCCTCCATCAGCAAAGGAGCACTTCTCTAATCATGCCCTCCCGAAGACTGGCTGGGAGAAGGTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab