CircRNA Information

General Information
circRNA Basic Information
CircID chr3:124927580|124927719
Strand +
CircType exon
Host Gene ENSG00000173702.6;
Algorism CIRI2;
Sequence CACAAATGTAAATTCATTAGCTACCTCTGACATAATCACCGCTTCATCTCCAAATGATGGATTAATCACAATGGTTCCTTCTGAAACACAAAGTAACAATGAAATGTCCCCCACCACAGAAGACAATCAATCATCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:124927580|124927719 hsa-let-7b-5p 0 0 1
chr3:124927580|124927719 hsa-let-7b-3p 0 0 1
chr3:124927580|124927719 hsa-let-7c-5p 0 0 1
chr3:124927580|124927719 hsa-let-7c-3p 0 0 1
chr3:124927580|124927719 hsa-let-7d-5p 0 0 1
chr3:124927580|124927719 hsa-let-7d-3p 0 0 1
chr3:124927580|124927719 hsa-let-7e-5p 0 0 1
chr3:124927580|124927719 hsa-let-7e-3p 0 0 1
chr3:124927580|124927719 hsa-miR-98-5p 0 0 1
chr3:124927580|124927719 hsa-miR-98-3p 0 0 1
chr3:124927580|124927719 hsa-let-7g-5p 0 0 1
chr3:124927580|124927719 hsa-let-7g-3p 0 0 1
chr3:124927580|124927719 hsa-let-7i-5p 0 0 1
chr3:124927580|124927719 hsa-let-7i-3p 0 0 1
chr3:124927580|124927719 hsa-miR-143-5p 0 0 1
chr3:124927580|124927719 hsa-miR-143-3p 0 0 1
chr3:124927580|124927719 hsa-miR-511-5p 0 0 1
chr3:124927580|124927719 hsa-miR-511-3p 0 0 1
chr3:124927580|124927719 hsa-miR-579-5p 0 0 1
chr3:124927580|124927719 hsa-miR-579-3p 0 0 1
chr3:124927580|124927719 hsa-miR-599 0 0 1
chr3:124927580|124927719 hsa-miR-620 0 0 1
chr3:124927580|124927719 hsa-miR-625-5p 0 0 1
chr3:124927580|124927719 hsa-miR-625-3p 0 0 1
chr3:124927580|124927719 hsa-miR-541-5p 0 0 1
chr3:124927580|124927719 hsa-miR-541-3p 0 0 1
chr3:124927580|124927719 hsa-miR-1270 0 0 1
chr3:124927580|124927719 hsa-miR-1275 0 0 1
chr3:124927580|124927719 hsa-miR-1252-5p 0 0 1
chr3:124927580|124927719 hsa-miR-1252-3p 0 0 1
chr3:124927580|124927719 hsa-miR-654-5p 1 0 1
chr3:124927580|124927719 hsa-miR-508-3p 0 0 1
chr3:124927580|124927719 hsa-let-7a 0 0 1
chr3:124927580|124927719 hsa-let-7f 0 0 1
chr3:124927580|124927719 hsa-miR-768-5p 0 0 1
chr3:124927580|124927719 hsa-miR-219-5p 0 0 1
chr3:124927580|124927719 hsa-miR-765 1 0 0
chr3:124927580|124927719 hsa-miR-4257 0 1 0
chr3:124927580|124927719 hsa-miR-4458 0 1 0
chr3:124927580|124927719 hsa-miR-4502 0 1 0
chr3:124927580|124927719 hsa-miR-4525 1 0 0
chr3:124927580|124927719 hsa-miR-5093 1 0 0
chr3:124927580|124927719 hsa-miR-5698 1 0 0
chr3:124927580|124927719 hsa-miR-6088 1 1 0
chr3:124927580|124927719 hsa-miR-8060 1 0 0
chr3:124927580|124927719 hsa-miR-127-5p 1 0 0
chr3:124927580|124927719 hsa-miR-92a-2-5p 1 1 0
chr3:124927580|124927719 hsa-miR-6765-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6880-5p 1 0 0
chr3:124927580|124927719 hsa-miR-7847-3p 1 0 0
chr3:124927580|124927719 hsa-miR-6742-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6810-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6786-5p 1 0 0
chr3:124927580|124927719 hsa-miR-7109-5p 1 0 0
chr3:124927580|124927719 hsa-miR-3616-3p 1 0 0
chr3:124927580|124927719 hsa-miR-450a-2-3p 1 0 0
chr3:124927580|124927719 hsa-miR-6801-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6769b-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6787-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6870-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6775-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6756-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6769a-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6803-5p 1 0 0
chr3:124927580|124927719 hsa-miR-7111-5p 1 0 0
chr3:124927580|124927719 hsa-miR-328-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6794-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6795-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6887-5p 1 0 0
chr3:124927580|124927719 hsa-miR-6885-5p 1 0 0
chr3:124927580|124927719 hsa-miR-4665-5p 1 0 0
chr3:124927580|124927719 hsa-miR-4700-5p 1 0 0
chr3:124927580|124927719 hsa-miR-4472 1 1 0
chr3:124927580|124927719 hsa-miR-6762-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:124927580|124927719
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MSSVVGDISLLLCVSEGTIVINPSFGDEAVIMSEVANEFTFV
Nucleotide Sequence TTGTCTTCTGTGGTGGGGGACATTTCATTGTTACTTTGTGTTTCAGAAGGAACCATTGTGATTAATCCATCATTTGGAGATGAAGCGGTGATTATGTCAGAGGTAGCTAATGAATTTACATTTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab