CircRNA Information

General Information
circRNA Basic Information
CircID chr3:124967939|124968228
Strand -
CircType exon
Host Gene ENSG00000173706.11;
Algorism CIRI2;
Sequence CCTTCCCTGCTGCAGTGTGTGACGGGACACACAGATGCCCCTGCGCCCGGCTCCTCTCTATGGAGGTTTAAGCATCTCTTGAGCAGTTACACATCACTTGCCCCTTCCTCTCACCTTCCCCCATCTGTGGGATATTGGTGCAGGATTGTGGCATCTGTGCACGTGAATCACACACCCCAGGTGCAGGGGCTGACATGGAGCACTGTGTCTGGGCGGAGAGCCTCGGCGTGCCAGGTGTGCATCCAGGCCTCTTCTGCTATCAGGTGTTTCCCCTCGGCCTAGGCGGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:124967939|124968228 hsa-miR-107 0 0 1
chr3:124967939|124968228 hsa-miR-214-5p 0 0 1
chr3:124967939|124968228 hsa-miR-214-3p 0 0 1
chr3:124967939|124968228 hsa-miR-377-5p 0 0 1
chr3:124967939|124968228 hsa-miR-377-3p 0 0 1
chr3:124967939|124968228 hsa-miR-335-5p 0 0 1
chr3:124967939|124968228 hsa-miR-335-3p 0 0 1
chr3:124967939|124968228 hsa-miR-564 0 0 1
chr3:124967939|124968228 hsa-miR-603 0 0 1
chr3:124967939|124968228 hsa-miR-608 0 0 1
chr3:124967939|124968228 hsa-miR-625-5p 0 0 1
chr3:124967939|124968228 hsa-miR-625-3p 0 0 1
chr3:124967939|124968228 hsa-miR-298 1 0 1
chr3:124967939|124968228 hsa-miR-1228-5p 0 0 1
chr3:124967939|124968228 hsa-miR-1228-3p 0 0 1
chr3:124967939|124968228 hsa-miR-1247-5p 0 0 1
chr3:124967939|124968228 hsa-miR-1247-3p 0 0 1
chr3:124967939|124968228 hsa-miR-1275 0 0 1
chr3:124967939|124968228 hsa-miR-767-5p 0 0 1
chr3:124967939|124968228 hsa-miR-1184 0 0 1
chr3:124967939|124968228 hsa-miR-767-3p 0 0 1
chr3:124967939|124968228 hsa-miR-188-3p 0 0 1
chr3:124967939|124968228 hsa-miR-342-5p 0 0 1
chr3:124967939|124968228 hsa-miR-509-3-5p 0 0 1
chr3:124967939|124968228 hsa-miR-509-5p 0 0 1
chr3:124967939|124968228 hsa-miR-128 0 0 1
chr3:124967939|124968228 hsa-miR-103 0 0 1
chr3:124967939|124968228 hsa-miR-1254 0 0 1
chr3:124967939|124968228 hsa-miR-1295 0 0 1
chr3:124967939|124968228 hsa-miR-637 1 0 0
chr3:124967939|124968228 hsa-miR-661 1 0 0
chr3:124967939|124968228 hsa-miR-663a 1 0 0
chr3:124967939|124968228 hsa-miR-2861 1 0 0
chr3:124967939|124968228 hsa-miR-3125 1 0 0
chr3:124967939|124968228 hsa-miR-3135a 1 0 0
chr3:124967939|124968228 hsa-miR-3154 1 0 0
chr3:124967939|124968228 hsa-miR-3185 1 0 0
chr3:124967939|124968228 hsa-miR-4271 1 0 0
chr3:124967939|124968228 hsa-miR-3916 1 0 0
chr3:124967939|124968228 hsa-miR-3936 1 0 0
chr3:124967939|124968228 hsa-miR-4489 1 0 0
chr3:124967939|124968228 hsa-miR-2392 1 0 0
chr3:124967939|124968228 hsa-miR-4689 1 0 0
chr3:124967939|124968228 hsa-miR-4710 1 0 0
chr3:124967939|124968228 hsa-miR-4739 1 0 0
chr3:124967939|124968228 hsa-miR-4767 1 0 0
chr3:124967939|124968228 hsa-miR-5698 1 0 0
chr3:124967939|124968228 hsa-miR-6088 1 0 0
chr3:124967939|124968228 hsa-miR-6127 1 0 0
chr3:124967939|124968228 hsa-miR-6133 1 0 0
chr3:124967939|124968228 hsa-miR-8075 1 0 0
chr3:124967939|124968228 hsa-miR-8078 1 0 0
chr3:124967939|124968228 hsa-miR-8085 1 0 0
chr3:124967939|124968228 hsa-miR-9899 1 0 0
chr3:124967939|124968228 hsa-miR-12115 1 0 0
chr3:124967939|124968228 hsa-miR-135a-3p 1 0 0
chr3:124967939|124968228 hsa-miR-4433b-3p 1 0 0
chr3:124967939|124968228 hsa-miR-6734-5p 1 0 0
chr3:124967939|124968228 hsa-miR-7106-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6894-5p 1 0 0
chr3:124967939|124968228 hsa-miR-766-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6089 1 0 0
chr3:124967939|124968228 hsa-miR-3192-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6721-5p 1 0 0
chr3:124967939|124968228 hsa-miR-3605-5p 1 0 0
chr3:124967939|124968228 hsa-miR-1292-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6805-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6765-3p 1 0 0
chr3:124967939|124968228 hsa-miR-1226-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6771-5p 1 0 0
chr3:124967939|124968228 hsa-miR-92b-5p 1 0 0
chr3:124967939|124968228 hsa-miR-877-5p 1 0 0
chr3:124967939|124968228 hsa-miR-149-3p 1 0 0
chr3:124967939|124968228 hsa-miR-6824-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6789-5p 1 0 0
chr3:124967939|124968228 hsa-miR-3162-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6781-5p 1 0 0
chr3:124967939|124968228 hsa-miR-423-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6499-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6801-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4750-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6869-3p 1 0 0
chr3:124967939|124968228 hsa-miR-2277-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6722-5p 1 0 0
chr3:124967939|124968228 hsa-miR-1233-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4763-3p 1 0 0
chr3:124967939|124968228 hsa-miR-6769b-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6778-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6787-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6816-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6865-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6870-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6743-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6754-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6756-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6803-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6851-5p 1 0 0
chr3:124967939|124968228 hsa-miR-1249-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6779-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6780a-5p 1 0 0
chr3:124967939|124968228 hsa-miR-7111-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4728-5p 1 0 0
chr3:124967939|124968228 hsa-miR-5189-5p 1 0 0
chr3:124967939|124968228 hsa-miR-5196-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6780b-5p 1 0 0
chr3:124967939|124968228 hsa-miR-1237-5p 1 0 0
chr3:124967939|124968228 hsa-miR-1909-3p 1 0 0
chr3:124967939|124968228 hsa-miR-4649-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4725-3p 1 0 0
chr3:124967939|124968228 hsa-miR-4745-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6729-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6858-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6883-5p 1 0 0
chr3:124967939|124968228 hsa-miR-939-5p 1 0 0
chr3:124967939|124968228 hsa-miR-10394-3p 1 0 0
chr3:124967939|124968228 hsa-miR-6758-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6856-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4747-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6891-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6785-5p 1 0 0
chr3:124967939|124968228 hsa-miR-4756-5p 1 0 0
chr3:124967939|124968228 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:124967939|124968228
ORF Type ORF1
Protein Length 91
Nucleotide Length 276
Protein Sequence MLQCVTGHTDAPAPGSSLWRFKHLLSSYTSLAPSSHLPPSVGYWCRIVASVHVNHTPQVQGLTWSTVSGRRASACQVCIQASSAIRCFPSA
Nucleotide Sequence CTGCTGCAGTGTGTGACGGGACACACAGATGCCCCTGCGCCCGGCTCCTCTCTATGGAGGTTTAAGCATCTCTTGAGCAGTTACACATCACTTGCCCCTTCCTCTCACCTTCCCCCATCTGTGGGATATTGGTGCAGGATTGTGGCATCTGTGCACGTGAATCACACACCCCAGGTGCAGGGGCTGACATGGAGCACTGTGTCTGGGCGGAGAGCCTCGGCGTGCCAGGTGTGCATCCAGGCCTCTTCTGCTATCAGGTGTTTCCCCTCGGCCTAG
CircID chr3:124967939|124968228
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MCLGGEPRRARCASRPLLLSGVSPRPRRD
Nucleotide Sequence CTGTGTCTGGGCGGAGAGCCTCGGCGTGCCAGGTGTGCATCCAGGCCTCTTCTGCTATCAGGTGTTTCCCCTCGGCCTAGGCGGGAC
CircID chr3:124967939|124968228
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MVQDCGICARESHTPGAGADMEHCVWAESLGVPGVHPGLFCYQVFPLGLGGT
Nucleotide Sequence TTGGTGCAGGATTGTGGCATCTGTGCACGTGAATCACACACCCCAGGTGCAGGGGCTGACATGGAGCACTGTGTCTGGGCGGAGAGCCTCGGCGTGCCAGGTGTGCATCCAGGCCTCTTCTGCTATCAGGTGTTTCCCCTCGGCCTAGGCGGGACC
CircID chr3:124967939|124968228
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MIAEEAWMHTWHAEALRPDTVLHVSPCTWGV
Nucleotide Sequence CTGATAGCAGAAGAGGCCTGGATGCACACCTGGCACGCCGAGGCTCTCCGCCCAGACACAGTGCTCCATGTCAGCCCCTGCACCTGGGGTGTGTGA
CircID chr3:124967939|124968228
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MLKRCLNLHREEPGAGASVCPVTHCSRE
Nucleotide Sequence CTGCTCAAGAGATGCTTAAACCTCCATAGAGAGGAGCCGGGCGCAGGGGCATCTGTGTGTCCCGTCACACACTGCAGCAGGGAA
CircID chr3:124967939|124968228
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MSAPAPGVCDSRAQMPQSCTNIPQMGEGERKGQVMCNCSRDA
Nucleotide Sequence ATGTCAGCCCCTGCACCTGGGGTGTGTGATTCACGTGCACAGATGCCACAATCCTGCACCAATATCCCACAGATGGGGGAAGGTGAGAGGAAGGGGCAAGTGATGTGTAACTGCTCAAGAGATGCTTAA
CircID chr3:124967939|124968228
ORF Type ORF7
Protein Length 50
Nucleotide Length 153
Protein Sequence MDAHLARRGSPPRHSAPCQPLHLGCVIHVHRCHNPAPISHRWGKVRGRGK
Nucleotide Sequence CTGGATGCACACCTGGCACGCCGAGGCTCTCCGCCCAGACACAGTGCTCCATGTCAGCCCCTGCACCTGGGGTGTGTGATTCACGTGCACAGATGCCACAATCCTGCACCAATATCCCACAGATGGGGGAAGGTGAGAGGAAGGGGCAAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab