CircRNA Information

General Information
circRNA Basic Information
CircID chr3:12564726|12564878
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACATGTTGCATGATTCCATTTATATGCAATGTCAGAAAAGGCAAATCTACAGAGACAAAAAGTAGATTAAGTGGTTGCCTAGGGTTGGGAGGAGAGAAGTGAGGGTGACTGTTAATGGGCACAAGGGATCTTTTGGGGGTGATAGAAATGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:12564726|12564878 hsa-miR-212-5p 0 0 1
chr3:12564726|12564878 hsa-miR-212-3p 0 0 1
chr3:12564726|12564878 hsa-miR-132-5p 0 0 1
chr3:12564726|12564878 hsa-miR-132-3p 0 0 1
chr3:12564726|12564878 hsa-miR-150-5p 0 0 1
chr3:12564726|12564878 hsa-miR-150-3p 0 0 1
chr3:12564726|12564878 hsa-miR-448 0 0 1
chr3:12564726|12564878 hsa-miR-522-5p 0 0 1
chr3:12564726|12564878 hsa-miR-522-3p 0 0 1
chr3:12564726|12564878 hsa-miR-593-5p 0 0 1
chr3:12564726|12564878 hsa-miR-593-3p 0 0 1
chr3:12564726|12564878 hsa-miR-623 0 0 1
chr3:12564726|12564878 hsa-miR-942-5p 0 0 1
chr3:12564726|12564878 hsa-miR-942-3p 0 0 1
chr3:12564726|12564878 hsa-miR-188-5p 0 0 1
chr3:12564726|12564878 hsa-miR-153 0 0 1
chr3:12564726|12564878 hsa-miR-935 1 0 0
chr3:12564726|12564878 hsa-miR-4279 1 1 0
chr3:12564726|12564878 hsa-miR-4641 1 0 0
chr3:12564726|12564878 hsa-miR-4780 1 0 0
chr3:12564726|12564878 hsa-miR-6749-3p 1 1 0
chr3:12564726|12564878 hsa-miR-668-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6879-3p 1 1 0
chr3:12564726|12564878 hsa-miR-6836-3p 1 0 0
chr3:12564726|12564878 hsa-miR-7110-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6726-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6845-3p 1 1 0
chr3:12564726|12564878 hsa-miR-877-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6740-3p 0 1 0
chr3:12564726|12564878 hsa-miR-4713-5p 1 0 0
chr3:12564726|12564878 hsa-miR-532-3p 1 0 0
chr3:12564726|12564878 hsa-miR-4436b-5p 1 0 0
chr3:12564726|12564878 hsa-miR-6803-3p 1 1 0
chr3:12564726|12564878 hsa-miR-7113-3p 1 0 0
chr3:12564726|12564878 hsa-miR-652-5p 0 1 0
chr3:12564726|12564878 hsa-miR-6809-3p 1 1 0
chr3:12564726|12564878 hsa-miR-7111-3p 1 0 0
chr3:12564726|12564878 hsa-miR-5196-3p 1 1 0
chr3:12564726|12564878 hsa-miR-1304-3p 1 0 0
chr3:12564726|12564878 hsa-miR-4640-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6793-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6782-3p 1 0 0
chr3:12564726|12564878 hsa-miR-4632-3p 1 0 0
chr3:12564726|12564878 hsa-miR-7848-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6865-3p 1 1 0
chr3:12564726|12564878 hsa-miR-1914-5p 1 0 0
chr3:12564726|12564878 hsa-miR-6773-3p 1 0 0
chr3:12564726|12564878 hsa-miR-328-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6777-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6794-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6802-3p 1 0 0
chr3:12564726|12564878 hsa-miR-1178-3p 1 0 0
chr3:12564726|12564878 hsa-miR-2681-5p 1 0 0
chr3:12564726|12564878 hsa-miR-3620-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6734-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6812-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6780b-3p 1 1 0
chr3:12564726|12564878 hsa-miR-320a-5p 1 0 0
chr3:12564726|12564878 hsa-miR-4685-3p 1 0 0
chr3:12564726|12564878 hsa-miR-6792-3p 1 0 0
chr3:12564726|12564878 hsa-miR-483-3p 1 1 0
chr3:12564726|12564878 hsa-miR-4691-5p 1 0 0
chr3:12564726|12564878 hsa-miR-6833-3p 0 1 0
chr3:12564726|12564878 hsa-miR-6814-3p 1 0 0
chr3:12564726|12564878 hsa-miR-376a-2-5p 0 1 0
chr3:12564726|12564878 hsa-miR-371b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:12564726|12564878
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MPRVGRREVRVTVNGHKGSFGGDRNV
Nucleotide Sequence TTGCCTAGGGTTGGGAGGAGAGAAGTGAGGGTGACTGTTAATGGGCACAAGGGATCTTTTGGGGGTGATAGAAATGTC

CircID chr3:12564726|12564878
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MIPFICNVRKGKSTETKSRLSGCLGLGGEK
Nucleotide Sequence ATGATTCCATTTATATGCAATGTCAGAAAAGGCAAATCTACAGAGACAAAAAGTAGATTAAGTGGTTGCCTAGGGTTGGGAGGAGAGAAGTGA

CircID chr3:12564726|12564878
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MCPLTVTLTSLLPTLGNHLIYFLSL
Nucleotide Sequence TTGTGCCCATTAACAGTCACCCTCACTTCTCTCCTCCCAACCCTAGGCAACCACTTAATCTACTTTTTGTCTCTGTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites