CircRNA Information

General Information
circRNA Basic Information
CircID chr3:127036235|127036377
Strand +
CircType exon
Host Gene ENSG00000114554.10;
Algorism CIRI2;
Sequence CCCCTTCATCACCACTGCCGTCCCCACCACCCGCCCATGCTACTCACATGGACAAGGGCAGCCTGGCAGGGCAGAGCAGAGCACAAGGCCTAAGGAGAGTGGGGGTTGGAACTGGATTCTGAAGGTGATGCAGGAGCCCCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:127036235|127036377 hsa-miR-34a-5p 0 0 1
chr3:127036235|127036377 hsa-miR-34a-3p 0 0 1
chr3:127036235|127036377 hsa-miR-449a 0 0 1
chr3:127036235|127036377 hsa-miR-449b-5p 0 0 1
chr3:127036235|127036377 hsa-miR-449b-3p 0 0 1
chr3:127036235|127036377 hsa-miR-874-5p 0 0 1
chr3:127036235|127036377 hsa-miR-874-3p 0 0 1
chr3:127036235|127036377 hsa-miR-541-5p 0 0 1
chr3:127036235|127036377 hsa-miR-541-3p 0 0 1
chr3:127036235|127036377 hsa-miR-938 0 0 1
chr3:127036235|127036377 hsa-miR-1293 0 0 1
chr3:127036235|127036377 hsa-miR-145-5p 0 0 1
chr3:127036235|127036377 hsa-miR-491-5p 0 0 1
chr3:127036235|127036377 hsa-miR-146b-3p 0 0 1
chr3:127036235|127036377 hsa-miR-654-5p 0 0 1
chr3:127036235|127036377 hsa-miR-767-3p 0 0 1
chr3:127036235|127036377 hsa-miR-324-3p 0 0 1
chr3:127036235|127036377 hsa-miR-34c-5p 0 0 1
chr3:127036235|127036377 hsa-miR-218 0 0 1
chr3:127036235|127036377 hsa-miR-1295 0 0 1
chr3:127036235|127036377 hsa-miR-886-3p 0 0 1
chr3:127036235|127036377 hsa-miR-184 1 0 0
chr3:127036235|127036377 hsa-miR-608 1 0 0
chr3:127036235|127036377 hsa-miR-638 1 0 0
chr3:127036235|127036377 hsa-miR-2113 1 0 0
chr3:127036235|127036377 hsa-miR-718 1 0 0
chr3:127036235|127036377 hsa-miR-3141 1 0 0
chr3:127036235|127036377 hsa-miR-3196 1 0 0
chr3:127036235|127036377 hsa-miR-3937 1 0 0
chr3:127036235|127036377 hsa-miR-4525 1 0 0
chr3:127036235|127036377 hsa-miR-3960 1 0 0
chr3:127036235|127036377 hsa-miR-7704 1 0 0
chr3:127036235|127036377 hsa-miR-8089 1 0 0
chr3:127036235|127036377 hsa-miR-6728-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6757-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6880-5p 1 0 0
chr3:127036235|127036377 hsa-miR-1915-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6845-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6829-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6805-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6728-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6884-3p 1 0 0
chr3:127036235|127036377 hsa-miR-1343-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6786-5p 1 0 0
chr3:127036235|127036377 hsa-miR-1229-5p 1 0 0
chr3:127036235|127036377 hsa-miR-5001-3p 1 0 0
chr3:127036235|127036377 hsa-miR-1908-5p 1 0 0
chr3:127036235|127036377 hsa-miR-1228-5p 1 0 0
chr3:127036235|127036377 hsa-miR-92b-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6501-5p 1 0 0
chr3:127036235|127036377 hsa-miR-5010-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6869-5p 1 0 0
chr3:127036235|127036377 hsa-miR-1225-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6743-3p 1 0 0
chr3:127036235|127036377 hsa-miR-7112-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6777-3p 1 0 0
chr3:127036235|127036377 hsa-miR-4763-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6769b-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6756-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6763-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6780b-5p 1 0 0
chr3:127036235|127036377 hsa-miR-328-5p 1 0 0
chr3:127036235|127036377 hsa-miR-4725-3p 1 0 0
chr3:127036235|127036377 hsa-miR-4758-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6785-5p 1 0 0
chr3:127036235|127036377 hsa-miR-9851-5p 1 0 0
chr3:127036235|127036377 hsa-miR-6805-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6775-3p 1 0 0
chr3:127036235|127036377 hsa-miR-6797-3p 1 0 0
chr3:127036235|127036377 hsa-miR-517a-3p 1 0 0
chr3:127036235|127036377 hsa-miR-517b-3p 1 0 0
chr3:127036235|127036377 hsa-miR-517c-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:127036235|127036377
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MPSPPPAHATHMDKGSLAGQSRAQGLRRVGVGTGF
Nucleotide Sequence CTGCCGTCCCCACCACCCGCCCATGCTACTCACATGGACAAGGGCAGCCTGGCAGGGCAGAGCAGAGCACAAGGCCTAAGGAGAGTGGGGGTTGGAACTGGATTCTGA
CircID chr3:127036235|127036377
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MCSALPCQAALVHVSSMGGWWGRQW
Nucleotide Sequence TTGTGCTCTGCTCTGCCCTGCCAGGCTGCCCTTGTCCATGTGAGTAGCATGGGCGGGTGGTGGGGACGGCAGTGGTGA
CircID chr3:127036235|127036377
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MHHLQNPVPTPTLLRPCALLCPARLPLSM
Nucleotide Sequence CTGCATCACCTTCAGAATCCAGTTCCAACCCCCACTCTCCTTAGGCCTTGTGCTCTGCTCTGCCCTGCCAGGCTGCCCTTGTCCATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab