CircRNA Information

General Information
circRNA Basic Information
CircID chr3:127660551|127660730
Strand +
CircType exon
Host Gene ENSG00000114631.10;
Algorism CIRI2;
Sequence CTCCACACCTGATGAGGCCTGGTCCCCGGAGTCTTCATGCCTGCTTTTGGTGGCCCCTGGGGTCTGGCTGCTGCTGGTGAGAGAAAAGTCACGGACCTGAGGCTTGGCTTCTTCTTGGGATCCATTCACAGGGAGCAGCTCCTCCTCTTCCTCCTCCTCTTGTTTCTCTACCTCTTCCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:127660551|127660730 hsa-let-7b-5p 0 0 1
chr3:127660551|127660730 hsa-let-7b-3p 0 0 1
chr3:127660551|127660730 hsa-let-7c-5p 0 0 1
chr3:127660551|127660730 hsa-let-7c-3p 0 0 1
chr3:127660551|127660730 hsa-let-7d-5p 0 0 1
chr3:127660551|127660730 hsa-let-7d-3p 0 0 1
chr3:127660551|127660730 hsa-let-7e-5p 0 0 1
chr3:127660551|127660730 hsa-let-7e-3p 0 0 1
chr3:127660551|127660730 hsa-miR-15a-5p 0 0 1
chr3:127660551|127660730 hsa-miR-15a-3p 0 0 1
chr3:127660551|127660730 hsa-miR-98-5p 0 0 1
chr3:127660551|127660730 hsa-miR-98-3p 0 0 1
chr3:127660551|127660730 hsa-let-7g-5p 0 0 1
chr3:127660551|127660730 hsa-let-7g-3p 0 0 1
chr3:127660551|127660730 hsa-let-7i-5p 0 0 1
chr3:127660551|127660730 hsa-let-7i-3p 0 0 1
chr3:127660551|127660730 hsa-miR-15b-5p 0 0 1
chr3:127660551|127660730 hsa-miR-15b-3p 0 0 1
chr3:127660551|127660730 hsa-miR-195-5p 0 0 1
chr3:127660551|127660730 hsa-miR-195-3p 0 0 1
chr3:127660551|127660730 hsa-miR-424-5p 0 0 1
chr3:127660551|127660730 hsa-miR-424-3p 0 0 1
chr3:127660551|127660730 hsa-miR-497-5p 0 0 1
chr3:127660551|127660730 hsa-miR-497-3p 0 0 1
chr3:127660551|127660730 hsa-miR-558 0 0 1
chr3:127660551|127660730 hsa-miR-634 0 1 1
chr3:127660551|127660730 hsa-miR-765 1 1 1
chr3:127660551|127660730 hsa-miR-708-5p 0 0 1
chr3:127660551|127660730 hsa-miR-708-3p 0 0 1
chr3:127660551|127660730 hsa-miR-1226-5p 0 0 1
chr3:127660551|127660730 hsa-miR-1226-3p 0 0 1
chr3:127660551|127660730 hsa-miR-1229-5p 0 0 1
chr3:127660551|127660730 hsa-miR-1229-3p 0 0 1
chr3:127660551|127660730 hsa-miR-1257 0 0 1
chr3:127660551|127660730 hsa-miR-125a-3p 0 0 1
chr3:127660551|127660730 hsa-miR-339-5p 0 0 1
chr3:127660551|127660730 hsa-miR-28-5p 0 0 1
chr3:127660551|127660730 hsa-miR-1274a 0 0 1
chr3:127660551|127660730 hsa-miR-1274b 0 0 1
chr3:127660551|127660730 hsa-miR-16 0 0 1
chr3:127660551|127660730 hsa-let-7a 0 0 1
chr3:127660551|127660730 hsa-let-7f 0 0 1
chr3:127660551|127660730 hsa-miR-298 1 0 0
chr3:127660551|127660730 hsa-miR-1253 0 1 0
chr3:127660551|127660730 hsa-miR-3131 1 0 0
chr3:127660551|127660730 hsa-miR-3132 1 0 0
chr3:127660551|127660730 hsa-miR-3154 1 0 0
chr3:127660551|127660730 hsa-miR-3185 0 1 0
chr3:127660551|127660730 hsa-miR-3916 1 1 0
chr3:127660551|127660730 hsa-miR-4476 1 0 0
chr3:127660551|127660730 hsa-miR-2392 1 0 0
chr3:127660551|127660730 hsa-miR-4688 1 0 0
chr3:127660551|127660730 hsa-miR-4739 1 1 0
chr3:127660551|127660730 hsa-miR-6124 1 0 0
chr3:127660551|127660730 hsa-miR-6165 1 0 0
chr3:127660551|127660730 hsa-miR-8060 0 1 0
chr3:127660551|127660730 hsa-miR-8085 1 0 0
chr3:127660551|127660730 hsa-miR-11399 0 1 0
chr3:127660551|127660730 hsa-miR-12114 1 0 0
chr3:127660551|127660730 hsa-miR-12125 0 1 0
chr3:127660551|127660730 hsa-miR-6894-5p 1 0 0
chr3:127660551|127660730 hsa-miR-766-5p 0 1 0
chr3:127660551|127660730 hsa-miR-5187-5p 1 0 0
chr3:127660551|127660730 hsa-miR-3934-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6880-5p 1 1 0
chr3:127660551|127660730 hsa-miR-7847-3p 1 1 0
chr3:127660551|127660730 hsa-miR-4695-5p 1 0 0
chr3:127660551|127660730 hsa-miR-4709-3p 1 1 0
chr3:127660551|127660730 hsa-miR-6890-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6806-5p 1 1 0
chr3:127660551|127660730 hsa-miR-197-5p 1 1 0
chr3:127660551|127660730 hsa-miR-6760-5p 1 1 0
chr3:127660551|127660730 hsa-miR-6782-5p 1 0 0
chr3:127660551|127660730 hsa-miR-7109-3p 0 1 0
chr3:127660551|127660730 hsa-miR-4786-3p 0 1 0
chr3:127660551|127660730 hsa-miR-4640-5p 1 0 0
chr3:127660551|127660730 hsa-miR-146b-3p 0 1 0
chr3:127660551|127660730 hsa-miR-6832-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6792-5p 1 0 0
chr3:127660551|127660730 hsa-miR-1207-5p 1 0 0
chr3:127660551|127660730 hsa-miR-4763-3p 1 0 0
chr3:127660551|127660730 hsa-miR-6743-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6813-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6851-5p 1 0 0
chr3:127660551|127660730 hsa-miR-11181-3p 1 1 0
chr3:127660551|127660730 hsa-miR-1249-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6722-3p 1 0 0
chr3:127660551|127660730 hsa-miR-7111-5p 0 1 0
chr3:127660551|127660730 hsa-miR-4649-5p 1 0 0
chr3:127660551|127660730 hsa-miR-4685-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6729-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6858-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6831-5p 1 1 0
chr3:127660551|127660730 hsa-miR-6731-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6876-5p 1 0 0
chr3:127660551|127660730 hsa-miR-6891-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6791-5p 1 0 0
chr3:127660551|127660730 hsa-miR-7107-3p 0 1 0
chr3:127660551|127660730 hsa-miR-6762-5p 1 1 0
chr3:127660551|127660730 hsa-miR-6859-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6764-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6833-3p 0 1 0
chr3:127660551|127660730 hsa-miR-6838-5p 0 1 0
chr3:127660551|127660730 hsa-miR-6820-3p 0 1 0
chr3:127660551|127660730 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:127660551|127660730
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MVPGVFMPAFGGPWGLAAAGERKVTDLRLGFFLGSIHREQLLLFLLLLFLYLFL
Nucleotide Sequence CTGGTCCCCGGAGTCTTCATGCCTGCTTTTGGTGGCCCCTGGGGTCTGGCTGCTGCTGGTGAGAGAAAAGTCACGGACCTGAGGCTTGGCTTCTTCTTGGGATCCATTCACAGGGAGCAGCTCCTCCTCTTCCTCCTCCTCTTGTTTCTCTACCTCTTCCTT
CircID chr3:127660551|127660730
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MASSWDPFTGSSSSSSSSSCFSTSS
Nucleotide Sequence TTGGCTTCTTCTTGGGATCCATTCACAGGGAGCAGCTCCTCCTCTTCCTCCTCCTCTTGTTTCTCTACCTCTTCC
CircID chr3:127660551|127660730
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MLPVNGSQEEAKPQVRDFSLTSSSQTPGATKSRHEDSGDQASSGVE
Nucleotide Sequence CTGCTCCCTGTGAATGGATCCCAAGAAGAAGCCAAGCCTCAGGTCCGTGACTTTTCTCTCACCAGCAGCAGCCAGACCCCAGGGGCCACCAAAAGCAGGCATGAAGACTCCGGGGACCAGGCCTCATCAGGTGTGGAG
CircID chr3:127660551|127660730
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MDPKKKPSLRSVTFLSPAAARPQGPPKAGMKTPGTRPHQVW
Nucleotide Sequence ATGGATCCCAAGAAGAAGCCAAGCCTCAGGTCCGTGACTTTTCTCTCACCAGCAGCAGCCAGACCCCAGGGGCCACCAAAAGCAGGCATGAAGACTCCGGGGACCAGGCCTCATCAGGTGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab