CircRNA Information

General Information
circRNA Basic Information
CircID chr3:127677770|127680017
Strand +
CircType exon
Host Gene ENSG00000114626.16;
Algorism CIRI2;
Sequence GCTCAGCACATCATAGGCTGCCTCGGGGGACAGCTCAGTGTGGTCGCTGTACATGTAGTAGAGCACGTGAGTGAAGACGTCGGGTGAGATGCCATGCAGGGTGACGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:127677770|127680017 hsa-miR-412-5p 0 0 1
chr3:127677770|127680017 hsa-miR-412-3p 0 0 1
chr3:127677770|127680017 hsa-miR-558 0 0 1
chr3:127677770|127680017 hsa-miR-1229-5p 0 0 1
chr3:127677770|127680017 hsa-miR-1229-3p 0 0 1
chr3:127677770|127680017 hsa-miR-1272 0 0 1
chr3:127677770|127680017 hsa-miR-1322 0 0 1
chr3:127677770|127680017 hsa-miR-1827 0 0 1
chr3:127677770|127680017 hsa-miR-4642 0 1 0
chr3:127677770|127680017 hsa-miR-4741 1 0 0
chr3:127677770|127680017 hsa-miR-6879-3p 1 0 0
chr3:127677770|127680017 hsa-miR-6765-3p 1 0 0
chr3:127677770|127680017 hsa-miR-6821-5p 1 0 0
chr3:127677770|127680017 hsa-miR-6837-3p 1 1 0
chr3:127677770|127680017 hsa-miR-3620-3p 1 1 0
chr3:127677770|127680017 hsa-miR-6799-3p 1 1 0
chr3:127677770|127680017 hsa-miR-6784-3p 0 1 0
chr3:127677770|127680017 hsa-miR-6862-3p 0 1 0
chr3:127677770|127680017 hsa-miR-4670-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:127677770|127680017
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MASHPTSSLTCSTTCTATTLSCPPRQPMMC
Nucleotide Sequence ATGGCATCTCACCCGACGTCTTCACTCACGTGCTCTACTACATGTACAGCGACCACACTGAGCTGTCCCCCGAGGCAGCCTATGATGTGCTGA
CircID chr3:127677770|127680017
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MHGISPDVFTHVLYYMYSDHTELSPEAAYDVLS
Nucleotide Sequence CTGCATGGCATCTCACCCGACGTCTTCACTCACGTGCTCTACTACATGTACAGCGACCACACTGAGCTGTCCCCCGAGGCAGCCTATGATGTGCTGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab