CircRNA Information

General Information
circRNA Basic Information
CircID chr3:127680001|127680298
Strand +
CircType exon
Host Gene ENSG00000114626.16;
Algorism CIRI2;
Sequence CGCCTCCACGAAGTCCTCCCGCTCCACCAGCTTCTCAATGACCTTGGCCATGTACTCAGTGCACTGGTCCTCAAGCCGCGCCAGGCGGAAGAGCTTGGCCACGCGCCACACACCCACCACAGTGTCCTCGTCTAGCATCTGAGCCAGGCTGCGGCCGCACAGCCTCTTCAGGCCTGGCAGCAGGTACATGTCGGCGACGCTCAGCACATCATAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:127680001|127680298 hsa-miR-148a-5p 0 0 1
chr3:127680001|127680298 hsa-miR-148a-3p 0 0 1
chr3:127680001|127680298 hsa-miR-152-5p 0 0 1
chr3:127680001|127680298 hsa-miR-152-3p 0 0 1
chr3:127680001|127680298 hsa-miR-149-5p 0 0 1
chr3:127680001|127680298 hsa-miR-149-3p 0 0 1
chr3:127680001|127680298 hsa-miR-370-5p 0 0 1
chr3:127680001|127680298 hsa-miR-370-3p 0 0 1
chr3:127680001|127680298 hsa-miR-148b-5p 0 0 1
chr3:127680001|127680298 hsa-miR-148b-3p 0 0 1
chr3:127680001|127680298 hsa-miR-580-5p 0 0 1
chr3:127680001|127680298 hsa-miR-580-3p 0 0 1
chr3:127680001|127680298 hsa-miR-609 0 0 1
chr3:127680001|127680298 hsa-miR-611 0 0 1
chr3:127680001|127680298 hsa-miR-616-5p 0 0 1
chr3:127680001|127680298 hsa-miR-616-3p 0 0 1
chr3:127680001|127680298 hsa-miR-650 0 0 1
chr3:127680001|127680298 hsa-miR-541-5p 0 0 1
chr3:127680001|127680298 hsa-miR-541-3p 0 0 1
chr3:127680001|127680298 hsa-miR-147b-5p 0 0 1
chr3:127680001|127680298 hsa-miR-147b-3p 0 0 1
chr3:127680001|127680298 hsa-miR-1181 0 0 1
chr3:127680001|127680298 hsa-miR-1236-5p 0 0 1
chr3:127680001|127680298 hsa-miR-1236-3p 0 0 1
chr3:127680001|127680298 hsa-miR-1204 0 0 1
chr3:127680001|127680298 hsa-miR-1253 0 0 1
chr3:127680001|127680298 hsa-miR-1272 0 0 1
chr3:127680001|127680298 hsa-miR-1322 0 0 1
chr3:127680001|127680298 hsa-miR-1197 0 0 1
chr3:127680001|127680298 hsa-miR-1825 0 0 1
chr3:127680001|127680298 hsa-miR-1224-5p 0 0 1
chr3:127680001|127680298 hsa-miR-485-5p 0 0 1
chr3:127680001|127680298 hsa-miR-654-5p 0 0 1
chr3:127680001|127680298 hsa-miR-644 0 0 1
chr3:127680001|127680298 hsa-miR-138 0 0 1
chr3:127680001|127680298 hsa-miR-1300 0 0 1
chr3:127680001|127680298 hsa-miR-24 0 0 1
chr3:127680001|127680298 hsa-miR-147 0 0 1
chr3:127680001|127680298 hsa-miR-663a 1 0 0
chr3:127680001|127680298 hsa-miR-658 1 0 0
chr3:127680001|127680298 hsa-miR-1182 1 0 0
chr3:127680001|127680298 hsa-miR-2861 1 0 0
chr3:127680001|127680298 hsa-miR-3131 1 0 0
chr3:127680001|127680298 hsa-miR-3141 1 0 0
chr3:127680001|127680298 hsa-miR-3196 1 0 0
chr3:127680001|127680298 hsa-miR-3652 1 0 0
chr3:127680001|127680298 hsa-miR-4429 1 0 0
chr3:127680001|127680298 hsa-miR-4430 1 0 0
chr3:127680001|127680298 hsa-miR-4451 1 0 0
chr3:127680001|127680298 hsa-miR-3135b 1 0 0
chr3:127680001|127680298 hsa-miR-4466 1 0 0
chr3:127680001|127680298 hsa-miR-4479 1 0 0
chr3:127680001|127680298 hsa-miR-4488 1 0 0
chr3:127680001|127680298 hsa-miR-3960 1 0 0
chr3:127680001|127680298 hsa-miR-4689 1 0 0
chr3:127680001|127680298 hsa-miR-4706 1 0 0
chr3:127680001|127680298 hsa-miR-4767 1 0 0
chr3:127680001|127680298 hsa-miR-5787 1 0 0
chr3:127680001|127680298 hsa-miR-6081 1 0 0
chr3:127680001|127680298 hsa-miR-6131 1 0 0
chr3:127680001|127680298 hsa-miR-6133 1 0 0
chr3:127680001|127680298 hsa-miR-6165 1 0 0
chr3:127680001|127680298 hsa-miR-8072 1 0 0
chr3:127680001|127680298 hsa-miR-8082 1 0 0
chr3:127680001|127680298 hsa-miR-12114 1 0 0
chr3:127680001|127680298 hsa-miR-12115 1 0 0
chr3:127680001|127680298 hsa-miR-4433b-3p 1 0 0
chr3:127680001|127680298 hsa-miR-504-3p 1 0 0
chr3:127680001|127680298 hsa-miR-6765-5p 1 0 0
chr3:127680001|127680298 hsa-miR-4687-3p 1 0 0
chr3:127680001|127680298 hsa-miR-8071 1 0 0
chr3:127680001|127680298 hsa-miR-6089 1 0 0
chr3:127680001|127680298 hsa-miR-3192-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6880-5p 1 0 0
chr3:127680001|127680298 hsa-miR-7847-3p 1 0 0
chr3:127680001|127680298 hsa-miR-4722-5p 1 0 0
chr3:127680001|127680298 hsa-miR-7154-3p 1 0 0
chr3:127680001|127680298 hsa-miR-7160-5p 1 0 0
chr3:127680001|127680298 hsa-miR-3187-3p 1 0 0
chr3:127680001|127680298 hsa-miR-3180-3p 1 0 0
chr3:127680001|127680298 hsa-miR-6748-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6514-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6874-5p 1 0 0
chr3:127680001|127680298 hsa-miR-5006-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6786-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1226-5p 1 0 0
chr3:127680001|127680298 hsa-miR-4738-3p 1 0 0
chr3:127680001|127680298 hsa-miR-4640-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1228-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6771-5p 1 0 0
chr3:127680001|127680298 hsa-miR-92b-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6781-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6895-5p 1 0 0
chr3:127680001|127680298 hsa-miR-664b-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1225-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1911-5p 1 0 0
chr3:127680001|127680298 hsa-miR-942-3p 1 0 0
chr3:127680001|127680298 hsa-miR-10400-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1233-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6778-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6816-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1343-5p 1 0 0
chr3:127680001|127680298 hsa-miR-3180 1 0 0
chr3:127680001|127680298 hsa-miR-6756-5p 1 0 0
chr3:127680001|127680298 hsa-miR-10401-5p 1 0 0
chr3:127680001|127680298 hsa-miR-11181-3p 1 0 0
chr3:127680001|127680298 hsa-miR-1249-5p 1 0 0
chr3:127680001|127680298 hsa-miR-7111-5p 1 0 0
chr3:127680001|127680298 hsa-miR-10396b-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1237-5p 1 0 0
chr3:127680001|127680298 hsa-miR-4649-5p 1 0 0
chr3:127680001|127680298 hsa-miR-4745-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6729-5p 1 0 0
chr3:127680001|127680298 hsa-miR-675-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6794-5p 1 0 0
chr3:127680001|127680298 hsa-miR-6858-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1238-5p 1 0 0
chr3:127680001|127680298 hsa-miR-4758-5p 1 0 0
chr3:127680001|127680298 hsa-miR-1271-3p 1 0 0
chr3:127680001|127680298 hsa-miR-4646-5p 1 0 0
chr3:127680001|127680298 hsa-miR-320a-3p 1 0 0
chr3:127680001|127680298 hsa-miR-320b 1 0 0
chr3:127680001|127680298 hsa-miR-320c 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:127680001|127680298
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MSQAAAAQPLQAWQQVHVGDAQHII
Nucleotide Sequence CTGAGCCAGGCTGCGGCCGCACAGCCTCTTCAGGCCTGGCAGCAGGTACATGTCGGCGACGCTCAGCACATCATA
CircID chr3:127680001|127680298
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MTLAMYSVHWSSSRARRKSLATRHTPTTVSSSSI
Nucleotide Sequence ATGACCTTGGCCATGTACTCAGTGCACTGGTCCTCAAGCCGCGCCAGGCGGAAGAGCTTGGCCACGCGCCACACACCCACCACAGTGTCCTCGTCTAGCATCTGA
CircID chr3:127680001|127680298
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MWWVCGAWPSSSAWRGLRTSALSTWPRSLRSWWSGRTSWR
Nucleotide Sequence CTGTGGTGGGTGTGTGGCGCGTGGCCAAGCTCTTCCGCCTGGCGCGGCTTGAGGACCAGTGCACTGAGTACATGGCCAAGGTCATTGAGAAGCTGGTGGAGCGGGAGGACTTCGTGGAGG
CircID chr3:127680001|127680298
ORF Type ORF4
Protein Length 68
Nucleotide Length 204
Protein Sequence MSVADMYLLPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEA
Nucleotide Sequence CTGAGCGTCGCCGACATGTACCTGCTGCCAGGCCTGAAGAGGCTGTGCGGCCGCAGCCTGGCTCAGATGCTAGACGAGGACACTGTGGTGGGTGTGTGGCGCGTGGCCAAGCTCTTCCGCCTGGCGCGGCTTGAGGACCAGTGCACTGAGTACATGGCCAAGGTCATTGAGAAGCTGGTGGAGCGGGAGGACTTCGTGGAGGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab