CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128071060|128071327
Strand -
CircType exon
Host Gene ENSG00000058262.8;
Algorism CIRI2;
Sequence AGTGGGCACACGGCAGCCTGCAAAGCACAGGGCCACCGCCACAGCCCGGCAGAGGGGCACACTCTGGAGACCTTGCTGGCAGTGCTAGCCAGGAAACAGAGTGACCAAGGGACAAGAAGGGACTTGCCTAAAGCCACCCAGCAACTCAGCAGCAGAACCAAGATGGGCCCCAGGCTCCTCCATATGGCCCAGGGCTTACCACCCTATCACACGTGGCCTTGTCTAGACCCAGTCCTGAGCAGGGGAGAGGCTCTTGAGACCTGATGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:128071060|128071327 hsa-miR-328-5p 0 0 1
chr3:128071060|128071327 hsa-miR-328-3p 0 0 1
chr3:128071060|128071327 hsa-miR-335-5p 0 0 1
chr3:128071060|128071327 hsa-miR-335-3p 0 0 1
chr3:128071060|128071327 hsa-miR-571 0 0 1
chr3:128071060|128071327 hsa-miR-578 0 0 1
chr3:128071060|128071327 hsa-miR-601 0 0 1
chr3:128071060|128071327 hsa-miR-621 0 0 1
chr3:128071060|128071327 hsa-miR-623 1 0 1
chr3:128071060|128071327 hsa-miR-636 0 0 1
chr3:128071060|128071327 hsa-miR-648 0 0 1
chr3:128071060|128071327 hsa-miR-661 1 0 1
chr3:128071060|128071327 hsa-miR-659-5p 0 0 1
chr3:128071060|128071327 hsa-miR-659-3p 0 0 1
chr3:128071060|128071327 hsa-miR-668-5p 0 0 1
chr3:128071060|128071327 hsa-miR-668-3p 0 0 1
chr3:128071060|128071327 hsa-miR-766-5p 0 0 1
chr3:128071060|128071327 hsa-miR-766-3p 0 0 1
chr3:128071060|128071327 hsa-miR-765 0 0 1
chr3:128071060|128071327 hsa-miR-1202 0 0 1
chr3:128071060|128071327 hsa-miR-663b 1 0 1
chr3:128071060|128071327 hsa-miR-1291 0 0 1
chr3:128071060|128071327 hsa-miR-1293 0 0 1
chr3:128071060|128071327 hsa-miR-1248 0 0 1
chr3:128071060|128071327 hsa-miR-513c-5p 0 0 1
chr3:128071060|128071327 hsa-miR-513c-3p 0 0 1
chr3:128071060|128071327 hsa-miR-193a-5p 0 0 1
chr3:128071060|128071327 hsa-miR-146b-3p 0 0 1
chr3:128071060|128071327 hsa-miR-574-5p 0 0 1
chr3:128071060|128071327 hsa-miR-525-5p 0 0 1
chr3:128071060|128071327 hsa-miR-331-3p 0 0 1
chr3:128071060|128071327 hsa-miR-767-3p 0 0 1
chr3:128071060|128071327 hsa-miR-520a-5p 0 0 1
chr3:128071060|128071327 hsa-miR-218 0 0 1
chr3:128071060|128071327 hsa-miR-219-1-3p 0 0 1
chr3:128071060|128071327 hsa-miR-608 1 0 0
chr3:128071060|128071327 hsa-miR-637 1 0 0
chr3:128071060|128071327 hsa-miR-762 1 0 0
chr3:128071060|128071327 hsa-miR-1295a 1 0 0
chr3:128071060|128071327 hsa-miR-1471 1 0 0
chr3:128071060|128071327 hsa-miR-4292 1 0 0
chr3:128071060|128071327 hsa-miR-3907 1 0 0
chr3:128071060|128071327 hsa-miR-4498 1 0 0
chr3:128071060|128071327 hsa-miR-4505 1 0 0
chr3:128071060|128071327 hsa-miR-1587 1 0 0
chr3:128071060|128071327 hsa-miR-4651 1 0 0
chr3:128071060|128071327 hsa-miR-4656 1 0 0
chr3:128071060|128071327 hsa-miR-4686 1 0 0
chr3:128071060|128071327 hsa-miR-4739 1 0 0
chr3:128071060|128071327 hsa-miR-4741 1 0 0
chr3:128071060|128071327 hsa-miR-5787 1 0 0
chr3:128071060|128071327 hsa-miR-9718 1 0 0
chr3:128071060|128071327 hsa-miR-4433a-3p 1 0 0
chr3:128071060|128071327 hsa-miR-6765-5p 1 0 0
chr3:128071060|128071327 hsa-miR-671-5p 1 0 0
chr3:128071060|128071327 hsa-miR-218-2-3p 1 0 0
chr3:128071060|128071327 hsa-miR-6861-5p 1 0 0
chr3:128071060|128071327 hsa-miR-4687-3p 1 0 0
chr3:128071060|128071327 hsa-miR-1225-3p 1 0 0
chr3:128071060|128071327 hsa-miR-874-3p 1 0 0
chr3:128071060|128071327 hsa-miR-6732-5p 1 0 0
chr3:128071060|128071327 hsa-miR-4640-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6749-5p 1 0 0
chr3:128071060|128071327 hsa-miR-4638-3p 1 0 0
chr3:128071060|128071327 hsa-miR-4746-3p 1 0 0
chr3:128071060|128071327 hsa-miR-1914-5p 1 0 0
chr3:128071060|128071327 hsa-miR-4749-3p 1 0 0
chr3:128071060|128071327 hsa-miR-4717-5p 1 0 0
chr3:128071060|128071327 hsa-miR-10400-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6787-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6812-5p 1 0 0
chr3:128071060|128071327 hsa-miR-1343-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6737-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6756-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6819-5p 1 0 0
chr3:128071060|128071327 hsa-miR-3127-3p 1 0 0
chr3:128071060|128071327 hsa-miR-3620-5p 1 0 0
chr3:128071060|128071327 hsa-miR-1909-3p 1 0 0
chr3:128071060|128071327 hsa-miR-4685-5p 1 0 0
chr3:128071060|128071327 hsa-miR-4726-5p 1 0 0
chr3:128071060|128071327 hsa-miR-939-5p 1 0 0
chr3:128071060|128071327 hsa-miR-1266-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6724-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6762-5p 1 0 0
chr3:128071060|128071327 hsa-miR-6775-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:128071060|128071327
ORF Type ORF1
Protein Length 66
Nucleotide Length 201
Protein Sequence METLLAVLARKQSDQGTRRDLPKATQQLSSRTKMGPRLLHMAQGLPPYHTWPCLDPVLSRGEALET
Nucleotide Sequence CTGGAGACCTTGCTGGCAGTGCTAGCCAGGAAACAGAGTGACCAAGGGACAAGAAGGGACTTGCCTAAAGCCACCCAGCAACTCAGCAGCAGAACCAAGATGGGCCCCAGGCTCCTCCATATGGCCCAGGGCTTACCACCCTATCACACGTGGCCTTGTCTAGACCCAGTCCTGAGCAGGGGAGAGGCTCTTGAGACCTGA
CircID chr3:128071060|128071327
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MQSTGPPPQPGRGAHSGDLAGSASQETE
Nucleotide Sequence CTGCAAAGCACAGGGCCACCGCCACAGCCCGGCAGAGGGGCACACTCTGGAGACCTTGCTGGCAGTGCTAGCCAGGAAACAGAGTGA
CircID chr3:128071060|128071327
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MGLDKATCDRVVSPGPYGGAWGPSWFCC
Nucleotide Sequence CTGGGTCTAGACAAGGCCACGTGTGATAGGGTGGTAAGCCCTGGGCCATATGGAGGAGCCTGGGGCCCATCTTGGTTCTGCTGCTGA
CircID chr3:128071060|128071327
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MSLGHSVSWLALPARSPECAPLPGCGGGPVLCRLPCAH
Nucleotide Sequence TTGTCCCTTGGTCACTCTGTTTCCTGGCTAGCACTGCCAGCAAGGTCTCCAGAGTGTGCCCCTCTGCCGGGCTGTGGCGGTGGCCCTGTGCTTTGCAGGCTGCCGTGTGCCCAC
CircID chr3:128071060|128071327
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MGHMEEPGAHLGSAAELLGGFRQVPSCPLVTLFPG
Nucleotide Sequence CTGGGCCATATGGAGGAGCCTGGGGCCCATCTTGGTTCTGCTGCTGAGTTGCTGGGTGGCTTTAGGCAAGTCCCTTCTTGTCCCTTGGTCACTCTGTTTCCTGGCTAG
CircID chr3:128071060|128071327
ORF Type ORF6
Protein Length 57
Nucleotide Length 171
Protein Sequence MGPILVLLLSCWVALGKSLLVPWSLCFLASTASKVSRVCPSAGLWRWPCALQAAVCP
Nucleotide Sequence CTGGGGCCCATCTTGGTTCTGCTGCTGAGTTGCTGGGTGGCTTTAGGCAAGTCCCTTCTTGTCCCTTGGTCACTCTGTTTCCTGGCTAGCACTGCCAGCAAGGTCTCCAGAGTGTGCCCCTCTGCCGGGCTGTGGCGGTGGCCCTGTGCTTTGCAGGCTGCCGTGTGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab