CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128341233|128341889
Strand +
CircType exon
Host Gene ENSG00000132394.10;
Algorism find_circ;CIRI2;DCC;
Sequence GTGGTGAAGAAGGTGAAGTCCATGCAGATGTTCCACATGCCCATCACTTCAGCCATGCAAGGAGACCGGCTGGGCATCTGCGTCACCCAGTTTGACCCTAAGCTGCTGGAGCGCGGGTTGGTGTGTGCCCCCGAGTCCCTGCACACTGTCCATGCGGCCCTCATCTCTGTGGAAAAGATACCGTATTTCCGGGGGCCCCTGCAAACCAAGGCCAAGTTCCACATTACAGTGGGCCATGAAACAGTCATGGGCCGGTTGATGTTCTTCAGTCCTGCTCCAGATAACTTTGACCAGGAGCCTATACTGGACTCTTTCAACTTCTCTCAAGAATACCTTTTCCAGGAGCAGTACCTGTCCAAGGATTTGACACCAGCAGTGACAGACAATGATGAGGCCGACAAGAAGGCCGGCCAGGCCACAGAGGGCCATTGTCCTCGGCAGCAGTGGGCCCTGGTGGAGTTTGAGAAGCCCGTCACCTGCCCTCGGCTGTGCCTGGTGATTGGCTCCAGGCTAGATGCGGACATTCACACCAACACGTGCCGGCTAGCCTTCCATGGCATCCTGCTCCACGGGCTAGAGGACAGGAACTACGCCGACAGCTTCCTGCCCAGGCTGAAGGTGTACAAGCTGAAGCACAAGCATGGCCTTGTGGAGCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:128341233|128341889
ORF Type ORF1
Protein Length 212
Nucleotide Length 636
Protein Sequence MQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER
Nucleotide Sequence ATGCAGATGTTCCACATGCCCATCACTTCAGCCATGCAAGGAGACCGGCTGGGCATCTGCGTCACCCAGTTTGACCCTAAGCTGCTGGAGCGCGGGTTGGTGTGTGCCCCCGAGTCCCTGCACACTGTCCATGCGGCCCTCATCTCTGTGGAAAAGATACCGTATTTCCGGGGGCCCCTGCAAACCAAGGCCAAGTTCCACATTACAGTGGGCCATGAAACAGTCATGGGCCGGTTGATGTTCTTCAGTCCTGCTCCAGATAACTTTGACCAGGAGCCTATACTGGACTCTTTCAACTTCTCTCAAGAATACCTTTTCCAGGAGCAGTACCTGTCCAAGGATTTGACACCAGCAGTGACAGACAATGATGAGGCCGACAAGAAGGCCGGCCAGGCCACAGAGGGCCATTGTCCTCGGCAGCAGTGGGCCCTGGTGGAGTTTGAGAAGCCCGTCACCTGCCCTCGGCTGTGCCTGGTGATTGGCTCCAGGCTAGATGCGGACATTCACACCAACACGTGCCGGCTAGCCTTCCATGGCATCCTGCTCCACGGGCTAGAGGACAGGAACTACGCCGACAGCTTCCTGCCCAGGCTGAAGGTGTACAAGCTGAAGCACAAGCATGGCCTTGTGGAGCGG
CircID chr3:128341233|128341889
ORF Type ORF2
Protein Length 127
Nucleotide Length 381
Protein Sequence MALCGLAGLLVGLIIVCHCWCQILGQVLLLEKVFLREVERVQYRLLVKVIWSRTEEHQPAHDCFMAHCNVELGLGLQGPPEIRYLFHRDEGRMDSVQGLGGTHQPALQQLRVKLGDADAQPVSLHG*
Nucleotide Sequence ATGGCCCTCTGTGGCCTGGCCGGCCTTCTTGTCGGCCTCATCATTGTCTGTCACTGCTGGTGTCAAATCCTTGGACAGGTACTGCTCCTGGAAAAGGTATTCTTGAGAGAAGTTGAAAGAGTCCAGTATAGGCTCCTGGTCAAAGTTATCTGGAGCAGGACTGAAGAACATCAACCGGCCCATGACTGTTTCATGGCCCACTGTAATGTGGAACTTGGCCTTGGTTTGCAGGGGCCCCCGGAAATACGGTATCTTTTCCACAGAGATGAGGGCCGCATGGACAGTGTGCAGGGACTCGGGGGCACACACCAACCCGCGCTCCAGCAGCTTAGGGTCAAACTGGGTGACGCAGATGCCCAGCCGGTCTCCTTGCATGGCTGA
CircID chr3:128341233|128341889
ORF Type ORF3
Protein Length 82
Nucleotide Length 246
Protein Sequence MTVSWPTVMWNLALVCRGPRKYGIFSTEMRAAWTVCRDSGAHTNPRSSSLGSNWVTQMPSRSPCMAEVMGMWNICMDFTFFT
Nucleotide Sequence ATGACTGTTTCATGGCCCACTGTAATGTGGAACTTGGCCTTGGTTTGCAGGGGCCCCCGGAAATACGGTATCTTTTCCACAGAGATGAGGGCCGCATGGACAGTGTGCAGGGACTCGGGGGCACACACCAACCCGCGCTCCAGCAGCTTAGGGTCAAACTGGGTGACGCAGATGCCCAGCCGGTCTCCTTGCATGGCTGAAGTGATGGGCATGTGGAACATCTGCATGGACTTCACCTTCTTCACC
CircID chr3:128341233|128341889
ORF Type ORF4
Protein Length 67
Nucleotide Length 201
Protein Sequence MSASSLEPITRHSRGQVTGFSNSTRAHCCRGQWPSVAWPAFLSASSLSVTAGVKSLDRYCSWKRYS*
Nucleotide Sequence ATGTCCGCATCTAGCCTGGAGCCAATCACCAGGCACAGCCGAGGGCAGGTGACGGGCTTCTCAAACTCCACCAGGGCCCACTGCTGCCGAGGACAATGGCCCTCTGTGGCCTGGCCGGCCTTCTTGTCGGCCTCATCATTGTCTGTCACTGCTGGTGTCAAATCCTTGGACAGGTACTGCTCCTGGAAAAGGTATTCTTGA
CircID chr3:128341233|128341889
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MMRPTRRPARPQRAIVLGSSGPWWSLRSPSPALGCAW*
Nucleotide Sequence ATGATGAGGCCGACAAGAAGGCCGGCCAGGCCACAGAGGGCCATTGTCCTCGGCAGCAGTGGGCCCTGGTGGAGTTTGAGAAGCCCGTCACCTGCCCTCGGCTGTGCCTGGTGA
CircID chr3:128341233|128341889
ORF Type ORF6
Protein Length 36
Nucleotide Length 108
Protein Sequence MRPSSLWKRYRISGGPCKPRPSSTLQWAMKQSWAG*
Nucleotide Sequence ATGCGGCCCTCATCTCTGTGGAAAAGATACCGTATTTCCGGGGGCCCCTGCAAACCAAGGCCAAGTTCCACATTACAGTGGGCCATGAAACAGTCATGGGCCGGTTGA
CircID chr3:128341233|128341889
ORF Type ORF7
Protein Length 56
Nucleotide Length 168
Protein Sequence VPGDWLQARCGHSHQHVPASLPWHPAPRARGQELRRQLPAQAEGVQAEAQAWPCGA
Nucleotide Sequence GTGCCTGGTGATTGGCTCCAGGCTAGATGCGGACATTCACACCAACACGTGCCGGCTAGCCTTCCATGGCATCCTGCTCCACGGGCTAGAGGACAGGAACTACGCCGACAGCTTCCTGCCCAGGCTGAAGGTGTACAAGCTGAAGCACAAGCATGGCCTTGTGGAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:128341233|128341889 ELAVL1 1 3 2
chr3:128341233|128341889 SF3B4 2 0 0
chr3:128341233|128341889 METAP2 0 0 1
chr3:128341233|128341889 TBRG4 0 0 1
chr3:128341233|128341889 YTHDF2 0 0 2
chr3:128341233|128341889 PRPF8 0 0 2
chr3:128341233|128341889 ZNF622 0 0 3
chr3:128341233|128341889 CAPRIN1 0 1 0
chr3:128341233|128341889 CPSF7 0 0 3
chr3:128341233|128341889 CPSF6 0 4 1
chr3:128341233|128341889 NUDT21 0 2 0
chr3:128341233|128341889 CPSF4 0 1 0
chr3:128341233|128341889 CPSF1 0 0 1
chr3:128341233|128341889 FUS 0 2 1
chr3:128341233|128341889 DGCR8 0 1 0
chr3:128341233|128341889 NOP58 0 0 2
chr3:128341233|128341889 SRSF3 1 0 0
chr3:128341233|128341889 U2AF2 14 0 0
chr3:128341233|128341889 DDX54 0 0 2
chr3:128341233|128341889 FIP1L1 1 1 1
chr3:128341233|128341889 PTBP1 2 7 0
chr3:128341233|128341889 HNRNPC 15 22 13
chr3:128341233|128341889 HNRNPA1 0 4 0
chr3:128341233|128341889 LIN28B 0 1 1
chr3:128341233|128341889 SND1 0 0 8
chr3:128341233|128341889 IGF2BP1 0 0 3
chr3:128341233|128341889 TARDBP 1 1 6
chr3:128341233|128341889 DDX24 0 0 3
chr3:128341233|128341889 RTCB 0 0 1
chr3:128341233|128341889 CSTF2T 1 0 1
chr3:128341233|128341889 SRRM4 0 0 1
chr3:128341233|128341889 CSTF2 1 4 0
chr3:128341233|128341889 PPIG 0 0 2
chr3:128341233|128341889 RPS3 0 0 1
chr3:128341233|128341889 ATXN2 0 1 0
chr3:128341233|128341889 EIF4A3 2 1 5
chr3:128341233|128341889 FBL 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab