CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128540696|128540929
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTAGGAGTGGAATTGCTGGGTTGTATGGTAGTGTTATGTTTAACTGTTTGAGAAACCACCAAATTATTTTTGTTTTCTTTTTAAGATGAGGTCTCGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCTCCCACCTCAGCATCCCAAAGCGCTGGGATTACAGGCATGAGGCATGCCACCATTACACACCCGGCCAGCCACCAAATTATTTTCCAAAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:128540696|128540929 hsa-miR-141-5p 0 0 1
chr3:128540696|128540929 hsa-miR-141-3p 0 0 1
chr3:128540696|128540929 hsa-miR-200a-5p 0 0 1
chr3:128540696|128540929 hsa-miR-200a-3p 0 0 1
chr3:128540696|128540929 hsa-miR-570-5p 0 0 1
chr3:128540696|128540929 hsa-miR-570-3p 0 0 1
chr3:128540696|128540929 hsa-miR-612 0 0 1
chr3:128540696|128540929 hsa-miR-661 0 0 1
chr3:128540696|128540929 hsa-miR-665 0 1 1
chr3:128540696|128540929 hsa-miR-1304-5p 0 0 1
chr3:128540696|128540929 hsa-miR-1304-3p 0 0 1
chr3:128540696|128540929 hsa-miR-513c-5p 0 0 1
chr3:128540696|128540929 hsa-miR-513c-3p 0 0 1
chr3:128540696|128540929 hsa-miR-769-5p 0 0 1
chr3:128540696|128540929 hsa-miR-876-3p 0 1 1
chr3:128540696|128540929 hsa-miR-769-3p 0 0 1
chr3:128540696|128540929 hsa-miR-483-3p 0 0 1
chr3:128540696|128540929 hsa-miR-450b-3p 0 0 1
chr3:128540696|128540929 hsa-miR-371-5p 0 0 1
chr3:128540696|128540929 hsa-miR-323-5p 0 0 1
chr3:128540696|128540929 hsa-miR-1285 0 0 1
chr3:128540696|128540929 hsa-miR-608 1 0 0
chr3:128540696|128540929 hsa-miR-4498 1 0 0
chr3:128540696|128540929 hsa-miR-4651 1 0 0
chr3:128540696|128540929 hsa-miR-4654 1 0 0
chr3:128540696|128540929 hsa-miR-4656 1 0 0
chr3:128540696|128540929 hsa-miR-4739 1 0 0
chr3:128540696|128540929 hsa-miR-5572 1 1 0
chr3:128540696|128540929 hsa-miR-5685 1 1 0
chr3:128540696|128540929 hsa-miR-5787 1 0 0
chr3:128540696|128540929 hsa-miR-6133 1 0 0
chr3:128540696|128540929 hsa-miR-6134 0 1 0
chr3:128540696|128540929 hsa-miR-8077 1 0 0
chr3:128540696|128540929 hsa-miR-12114 1 0 0
chr3:128540696|128540929 hsa-miR-203a-5p 0 1 0
chr3:128540696|128540929 hsa-miR-6734-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6765-5p 1 0 0
chr3:128540696|128540929 hsa-miR-3150a-3p 1 0 0
chr3:128540696|128540929 hsa-miR-7106-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6894-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6799-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6728-5p 1 1 0
chr3:128540696|128540929 hsa-miR-6089 1 0 0
chr3:128540696|128540929 hsa-miR-7160-5p 0 1 0
chr3:128540696|128540929 hsa-miR-6741-5p 1 0 0
chr3:128540696|128540929 hsa-miR-512-3p 1 0 0
chr3:128540696|128540929 hsa-miR-6849-3p 0 1 0
chr3:128540696|128540929 hsa-miR-6742-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6829-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6782-5p 1 0 0
chr3:128540696|128540929 hsa-miR-7109-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6740-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6784-5p 1 0 0
chr3:128540696|128540929 hsa-miR-4640-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6514-3p 0 1 0
chr3:128540696|128540929 hsa-miR-149-3p 1 0 0
chr3:128540696|128540929 hsa-miR-6802-5p 1 0 0
chr3:128540696|128540929 hsa-miR-7850-5p 1 0 0
chr3:128540696|128540929 hsa-miR-7162-3p 0 1 0
chr3:128540696|128540929 hsa-miR-5002-5p 0 1 0
chr3:128540696|128540929 hsa-miR-4766-3p 0 1 0
chr3:128540696|128540929 hsa-miR-1233-5p 1 0 0
chr3:128540696|128540929 hsa-miR-1273h-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6778-5p 1 1 0
chr3:128540696|128540929 hsa-miR-6812-5p 1 1 0
chr3:128540696|128540929 hsa-miR-6737-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6756-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6803-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6819-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6851-5p 1 0 0
chr3:128540696|128540929 hsa-miR-11181-3p 1 0 0
chr3:128540696|128540929 hsa-miR-1249-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6722-3p 1 0 0
chr3:128540696|128540929 hsa-miR-6779-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6780a-5p 1 0 0
chr3:128540696|128540929 hsa-miR-7111-5p 1 0 0
chr3:128540696|128540929 hsa-miR-3620-5p 1 0 0
chr3:128540696|128540929 hsa-miR-4728-5p 1 0 0
chr3:128540696|128540929 hsa-miR-5189-5p 0 1 0
chr3:128540696|128540929 hsa-miR-4632-5p 1 0 0
chr3:128540696|128540929 hsa-miR-4685-5p 1 0 0
chr3:128540696|128540929 hsa-miR-4726-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6795-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6848-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6858-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6887-5p 1 0 0
chr3:128540696|128540929 hsa-miR-3187-5p 0 1 0
chr3:128540696|128540929 hsa-miR-939-5p 1 0 0
chr3:128540696|128540929 hsa-miR-1285-3p 1 1 0
chr3:128540696|128540929 hsa-miR-3116 1 0 0
chr3:128540696|128540929 hsa-miR-6766-5p 1 0 0
chr3:128540696|128540929 hsa-miR-6762-5p 1 0 0
chr3:128540696|128540929 hsa-miR-373-3p 1 0 0
chr3:128540696|128540929 hsa-miR-363-5p 1 0 0
chr3:128540696|128540929 hsa-miR-548b-5p 1 0 0
chr3:128540696|128540929 hsa-miR-548d-5p 0 1 0
chr3:128540696|128540929 hsa-miR-548az-5p 0 1 0
chr3:128540696|128540929 hsa-miR-548ag 0 1 0
chr3:128540696|128540929 hsa-miR-4999-3p 0 1 0
chr3:128540696|128540929 hsa-miR-98-3p 0 1 0
chr3:128540696|128540929 hsa-miR-548ay-5p 0 1 0
chr3:128540696|128540929 hsa-miR-548ad-5p 0 1 0
chr3:128540696|128540929 hsa-miR-548ae-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:128540696|128540929
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence MFEKPPNYFCFLFKMRSRYVAQAGLELLASSDPPTSASQSAGITGMRHATITHPASHQIIFQS
Nucleotide Sequence CTGTTTGAGAAACCACCAAATTATTTTTGTTTTCTTTTTAAGATGAGGTCTCGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCTCCCACCTCAGCATCCCAAAGCGCTGGGATTACAGGCATGAGGCATGCCACCATTACACACCCGGCCAGCCACCAAATTATTTTCCAAAGC
CircID chr3:128540696|128540929
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLPRLVLNSWPQVILPPQHPKALGLQA
Nucleotide Sequence ATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCTCCCACCTCAGCATCCCAAAGCGCTGGGATTACAGGCATGA
CircID chr3:128540696|128540929
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence LLWKIIWWLAGCVMVACLMPVIPALWDAEVGGSLEARSSRPAWAT
Nucleotide Sequence CTGCTTTGGAAAATAATTTGGTGGCTGGCCGGGTGTGTAATGGTGGCATGCCTCATGCCTGTAATCCCAGCGCTTTGGGATGCTGAGGTGGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGCAACATAG
CircID chr3:128540696|128540929
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MENNLVAGRVCNGGMPHACNPSALGC
Nucleotide Sequence TTGGAAAATAATTTGGTGGCTGGCCGGGTGTGTAATGGTGGCATGCCTCATGCCTGTAATCCCAGCGCTTTGGGATGCTGA
CircID chr3:128540696|128540929
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MGNIARPHLKKKTKIIWWFLKQLNITLPYNPAIPLL
Nucleotide Sequence CTGGGCAACATAGCGAGACCTCATCTTAAAAAGAAAACAAAAATAATTTGGTGGTTTCTCAAACAGTTAAACATAACACTACCATACAACCCAGCAATTCCACTCCTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab