CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128622183|128622308
Strand +
CircType exon
Host Gene ENSG00000163902.10;
Algorism CIRI2;
Sequence CGTCAATAGGTACAAGCAATCCCGGGACATCTCCACCCTCAACAGTGGCAAGAAGAGCCTGGAGACTGAACACAAGGCCTTGACCAGTGAGATTGCACTGCTGCAGTCCAGGCTGAAGACAGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:128622183|128622308 hsa-miR-107 0 0 1
chr3:128622183|128622308 hsa-miR-148a-5p 0 0 1
chr3:128622183|128622308 hsa-miR-148a-3p 0 0 1
chr3:128622183|128622308 hsa-miR-216a-5p 0 0 1
chr3:128622183|128622308 hsa-miR-216a-3p 0 0 1
chr3:128622183|128622308 hsa-miR-130a-5p 0 0 1
chr3:128622183|128622308 hsa-miR-130a-3p 0 0 1
chr3:128622183|128622308 hsa-miR-152-5p 0 0 1
chr3:128622183|128622308 hsa-miR-152-3p 0 0 1
chr3:128622183|128622308 hsa-miR-301a-5p 0 0 1
chr3:128622183|128622308 hsa-miR-301a-3p 0 0 1
chr3:128622183|128622308 hsa-miR-130b-5p 0 0 1
chr3:128622183|128622308 hsa-miR-130b-3p 0 0 1
chr3:128622183|128622308 hsa-miR-148b-5p 0 0 1
chr3:128622183|128622308 hsa-miR-148b-3p 0 0 1
chr3:128622183|128622308 hsa-miR-422a 0 0 1
chr3:128622183|128622308 hsa-miR-484 0 0 1
chr3:128622183|128622308 hsa-miR-581 0 1 1
chr3:128622183|128622308 hsa-miR-620 0 0 1
chr3:128622183|128622308 hsa-miR-622 0 0 1
chr3:128622183|128622308 hsa-miR-454-5p 0 0 1
chr3:128622183|128622308 hsa-miR-454-3p 0 0 1
chr3:128622183|128622308 hsa-miR-766-5p 0 0 1
chr3:128622183|128622308 hsa-miR-766-3p 0 0 1
chr3:128622183|128622308 hsa-miR-301b-5p 0 0 1
chr3:128622183|128622308 hsa-miR-301b-3p 0 0 1
chr3:128622183|128622308 hsa-miR-1208 0 1 1
chr3:128622183|128622308 hsa-miR-1267 0 0 1
chr3:128622183|128622308 hsa-miR-1270 0 0 1
chr3:128622183|128622308 hsa-miR-1288-5p 0 0 1
chr3:128622183|128622308 hsa-miR-1288-3p 0 0 1
chr3:128622183|128622308 hsa-miR-1184 0 0 1
chr3:128622183|128622308 hsa-miR-509-3-5p 0 1 1
chr3:128622183|128622308 hsa-miR-509-5p 0 1 1
chr3:128622183|128622308 hsa-miR-103 0 0 1
chr3:128622183|128622308 hsa-miR-378 0 0 1
chr3:128622183|128622308 hsa-miR-1269 0 0 1
chr3:128622183|128622308 hsa-miR-1254 0 0 1
chr3:128622183|128622308 hsa-miR-1269a 1 1 0
chr3:128622183|128622308 hsa-miR-378b 0 1 0
chr3:128622183|128622308 hsa-miR-378c 0 1 0
chr3:128622183|128622308 hsa-miR-4312 0 1 0
chr3:128622183|128622308 hsa-miR-4449 1 1 0
chr3:128622183|128622308 hsa-miR-4453 1 1 0
chr3:128622183|128622308 hsa-miR-1269b 0 1 0
chr3:128622183|128622308 hsa-miR-378i 0 1 0
chr3:128622183|128622308 hsa-miR-6081 1 0 0
chr3:128622183|128622308 hsa-miR-6745 0 1 0
chr3:128622183|128622308 hsa-miR-4726-3p 1 0 0
chr3:128622183|128622308 hsa-miR-200b-5p 0 1 0
chr3:128622183|128622308 hsa-miR-6782-5p 1 0 0
chr3:128622183|128622308 hsa-miR-3690 0 1 0
chr3:128622183|128622308 hsa-miR-2276-5p 0 1 0
chr3:128622183|128622308 hsa-miR-653-3p 0 1 0
chr3:128622183|128622308 hsa-miR-3664-5p 0 1 0
chr3:128622183|128622308 hsa-miR-5001-5p 1 0 0
chr3:128622183|128622308 hsa-miR-6752-5p 1 0 0
chr3:128622183|128622308 hsa-miR-6803-5p 1 0 0
chr3:128622183|128622308 hsa-miR-6819-5p 1 0 0
chr3:128622183|128622308 hsa-miR-4745-5p 1 0 0
chr3:128622183|128622308 hsa-miR-3116 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:128622183|128622308
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MDCSSAISLVKALCSVSRLFLPLLRVEMSRDCLYLLT
Nucleotide Sequence CTGGACTGCAGCAGTGCAATCTCACTGGTCAAGGCCTTGTGTTCAGTCTCCAGGCTCTTCTTGCCACTGTTGAGGGTGGAGATGTCCCGGGATTGCTTGTACCTATTGACG
CircID chr3:128622183|128622308
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSSAWTAAVQSHWSRPCVQSPGSSCHC
Nucleotide Sequence CTGTCTTCAGCCTGGACTGCAGCAGTGCAATCTCACTGGTCAAGGCCTTGTGTTCAGTCTCCAGGCTCTTCTTGCCACTGTTGA
CircID chr3:128622183|128622308
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MQQCNLTGQGLVFSLQALLATVEGGDVPGLLVPID
Nucleotide Sequence CTGCAGCAGTGCAATCTCACTGGTCAAGGCCTTGTGTTCAGTCTCCAGGCTCTTCTTGCCACTGTTGAGGGTGGAGATGTCCCGGGATTGCTTGTACCTATTGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab