CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128846803|128847014
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCGTGGGCCTCGCTTTCTTTCCCCATGCTCTGCACTCTGCCACGCACCCCTTCCTCGGCCAGGCGGACAGAGGAAATGCAGATGCTGGAGGCAGGAGCACTGGACTGGGAATTAGACTTGGAGTAAAATCTAAATGCCCTATGGGCCTGGCTCTTCTCTGGAGTTCGGCTTCATGTTAACTGTGATTGGGGGACAAGGGACAGTAAGACCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:128846803|128847014 hsa-miR-27a-5p 0 0 1
chr3:128846803|128847014 hsa-miR-27a-3p 0 0 1
chr3:128846803|128847014 hsa-miR-27b-5p 0 0 1
chr3:128846803|128847014 hsa-miR-27b-3p 0 0 1
chr3:128846803|128847014 hsa-miR-623 0 0 1
chr3:128846803|128847014 hsa-miR-766-5p 0 0 1
chr3:128846803|128847014 hsa-miR-766-3p 0 0 1
chr3:128846803|128847014 hsa-miR-1238-5p 0 0 1
chr3:128846803|128847014 hsa-miR-1238-3p 0 0 1
chr3:128846803|128847014 hsa-miR-1253 0 0 1
chr3:128846803|128847014 hsa-miR-1825 0 1 1
chr3:128846803|128847014 hsa-miR-199a-5p 0 0 1
chr3:128846803|128847014 hsa-miR-525-5p 0 0 1
chr3:128846803|128847014 hsa-miR-508-5p 0 1 1
chr3:128846803|128847014 hsa-miR-361-3p 0 0 1
chr3:128846803|128847014 hsa-miR-199b-5p 0 0 1
chr3:128846803|128847014 hsa-miR-338-3p 0 1 1
chr3:128846803|128847014 hsa-miR-342-5p 0 0 1
chr3:128846803|128847014 hsa-miR-520a-5p 0 1 1
chr3:128846803|128847014 hsa-miR-455-3p 0 0 1
chr3:128846803|128847014 hsa-miR-128 0 0 1
chr3:128846803|128847014 hsa-miR-198 1 1 0
chr3:128846803|128847014 hsa-miR-759 0 1 0
chr3:128846803|128847014 hsa-miR-1976 0 1 0
chr3:128846803|128847014 hsa-miR-2110 0 1 0
chr3:128846803|128847014 hsa-miR-3132 1 0 0
chr3:128846803|128847014 hsa-miR-3153 0 1 0
chr3:128846803|128847014 hsa-miR-3175 1 0 0
chr3:128846803|128847014 hsa-miR-4326 0 1 0
chr3:128846803|128847014 hsa-miR-4271 1 0 0
chr3:128846803|128847014 hsa-miR-3936 1 1 0
chr3:128846803|128847014 hsa-miR-4476 0 1 0
chr3:128846803|128847014 hsa-miR-5695 0 1 0
chr3:128846803|128847014 hsa-miR-6090 1 0 0
chr3:128846803|128847014 hsa-miR-8060 0 1 0
chr3:128846803|128847014 hsa-miR-8085 1 0 0
chr3:128846803|128847014 hsa-miR-4747-3p 1 0 0
chr3:128846803|128847014 hsa-miR-504-3p 1 1 0
chr3:128846803|128847014 hsa-miR-6747-3p 0 1 0
chr3:128846803|128847014 hsa-miR-6747-5p 1 1 0
chr3:128846803|128847014 hsa-miR-6857-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6089 1 0 0
chr3:128846803|128847014 hsa-miR-4755-3p 0 1 0
chr3:128846803|128847014 hsa-miR-197-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6881-5p 1 0 0
chr3:128846803|128847014 hsa-miR-2467-3p 1 0 0
chr3:128846803|128847014 hsa-miR-6782-5p 0 1 0
chr3:128846803|128847014 hsa-miR-5008-5p 0 1 0
chr3:128846803|128847014 hsa-miR-3691-3p 0 1 0
chr3:128846803|128847014 hsa-miR-6835-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6772-3p 0 1 0
chr3:128846803|128847014 hsa-miR-185-5p 0 1 0
chr3:128846803|128847014 hsa-miR-1228-5p 1 0 0
chr3:128846803|128847014 hsa-miR-4732-5p 1 1 0
chr3:128846803|128847014 hsa-miR-6818-3p 1 1 0
chr3:128846803|128847014 hsa-miR-6780a-3p 0 1 0
chr3:128846803|128847014 hsa-miR-6895-5p 0 1 0
chr3:128846803|128847014 hsa-miR-4742-3p 0 1 0
chr3:128846803|128847014 hsa-miR-345-5p 1 0 0
chr3:128846803|128847014 hsa-miR-501-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6760-3p 1 1 0
chr3:128846803|128847014 hsa-miR-6748-3p 1 1 0
chr3:128846803|128847014 hsa-miR-3179 0 1 0
chr3:128846803|128847014 hsa-miR-6780b-3p 0 1 0
chr3:128846803|128847014 hsa-miR-6733-3p 0 1 0
chr3:128846803|128847014 hsa-miR-4763-3p 1 0 0
chr3:128846803|128847014 hsa-miR-6812-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6775-5p 0 1 0
chr3:128846803|128847014 hsa-miR-6756-5p 1 0 0
chr3:128846803|128847014 hsa-miR-7107-5p 1 0 0
chr3:128846803|128847014 hsa-miR-7110-5p 1 1 0
chr3:128846803|128847014 hsa-miR-5196-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6780b-5p 1 0 0
chr3:128846803|128847014 hsa-miR-675-5p 1 0 0
chr3:128846803|128847014 hsa-miR-6831-5p 1 0 0
chr3:128846803|128847014 hsa-miR-4747-5p 1 1 0
chr3:128846803|128847014 hsa-miR-3059-5p 0 1 0
chr3:128846803|128847014 hsa-miR-550a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:128846803|128847014
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLCTLPRTPSSARRTEEMQMLEAGALDWELDLE
Nucleotide Sequence ATGCTCTGCACTCTGCCACGCACCCCTTCCTCGGCCAGGCGGACAGAGGAAATGCAGATGCTGGAGGCAGGAGCACTGGACTGGGAATTAGACTTGGAGTAA

CircID chr3:128846803|128847014
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MPYGPGSSLEFGFMLTVIGGQGTVRP
Nucleotide Sequence ATGCCCTATGGGCCTGGCTCTTCTCTGGAGTTCGGCTTCATGTTAACTGTGATTGGGGGACAAGGGACAGTAAGACCG

CircID chr3:128846803|128847014
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MHSATHPFLGQADRGNADAGGRSTGLGIRLGVKSKCPMGLALLWSSASC
Nucleotide Sequence CTGCACTCTGCCACGCACCCCTTCCTCGGCCAGGCGGACAGAGGAAATGCAGATGCTGGAGGCAGGAGCACTGGACTGGGAATTAGACTTGGAGTAAAATCTAAATGCCCTATGGGCCTGGCTCTTCTCTGGAGTTCGGCTTCATGTTAA

CircID chr3:128846803|128847014
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MPPASAFPLSAWPRKGCVAECRAWGKKARPT
Nucleotide Sequence CTGCCTCCAGCATCTGCATTTCCTCTGTCCGCCTGGCCGAGGAAGGGGTGCGTGGCAGAGTGCAGAGCATGGGGAAAGAAAGCGAGGCCCACG

CircID chr3:128846803|128847014
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MHFLCPPGRGRGAWQSAEHGERKRGPR
Nucleotide Sequence CTGCATTTCCTCTGTCCGCCTGGCCGAGGAAGGGGTGCGTGGCAGAGTGCAGAGCATGGGGAAAGAAAGCGAGGCCCACGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites