CircRNA Information

General Information
circRNA Basic Information
CircID chr3:128906681|128906810
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCCAAACCCACTGCCTGCCCCAGCCCACCTAGCAGGGCTGACTGCTGCTCCCAGAAAGCCCTTCACTCTCTCTTCATTCACCTTGTGCCAGCAGATCAGTCCCATCTGGGCCTGGCGCGCTCTATTACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:128906681|128906810 hsa-miR-15a-5p 0 0 1
chr3:128906681|128906810 hsa-miR-15a-3p 0 0 1
chr3:128906681|128906810 hsa-miR-34a-5p 0 0 1
chr3:128906681|128906810 hsa-miR-34a-3p 0 0 1
chr3:128906681|128906810 hsa-miR-15b-5p 0 0 1
chr3:128906681|128906810 hsa-miR-15b-3p 0 0 1
chr3:128906681|128906810 hsa-miR-195-5p 0 0 1
chr3:128906681|128906810 hsa-miR-195-3p 0 0 1
chr3:128906681|128906810 hsa-miR-424-5p 0 0 1
chr3:128906681|128906810 hsa-miR-424-3p 0 0 1
chr3:128906681|128906810 hsa-miR-449a 0 0 1
chr3:128906681|128906810 hsa-miR-497-5p 0 0 1
chr3:128906681|128906810 hsa-miR-497-3p 0 0 1
chr3:128906681|128906810 hsa-miR-624-5p 0 0 1
chr3:128906681|128906810 hsa-miR-624-3p 0 0 1
chr3:128906681|128906810 hsa-miR-629-5p 0 0 1
chr3:128906681|128906810 hsa-miR-629-3p 0 0 1
chr3:128906681|128906810 hsa-miR-449b-5p 0 0 1
chr3:128906681|128906810 hsa-miR-449b-3p 0 0 1
chr3:128906681|128906810 hsa-miR-541-5p 0 0 1
chr3:128906681|128906810 hsa-miR-541-3p 0 0 1
chr3:128906681|128906810 hsa-miR-920 0 0 1
chr3:128906681|128906810 hsa-miR-1257 1 0 1
chr3:128906681|128906810 hsa-miR-486-3p 1 1 1
chr3:128906681|128906810 hsa-miR-654-5p 0 0 1
chr3:128906681|128906810 hsa-miR-34c-5p 0 0 1
chr3:128906681|128906810 hsa-miR-16 0 0 1
chr3:128906681|128906810 hsa-miR-762 1 1 0
chr3:128906681|128906810 hsa-miR-765 1 0 0
chr3:128906681|128906810 hsa-miR-3141 1 0 0
chr3:128906681|128906810 hsa-miR-3185 1 0 0
chr3:128906681|128906810 hsa-miR-3195 1 1 0
chr3:128906681|128906810 hsa-miR-3196 1 0 0
chr3:128906681|128906810 hsa-miR-4322 1 0 0
chr3:128906681|128906810 hsa-miR-4270 1 0 0
chr3:128906681|128906810 hsa-miR-4458 1 0 0
chr3:128906681|128906810 hsa-miR-3135b 1 0 0
chr3:128906681|128906810 hsa-miR-4466 1 0 0
chr3:128906681|128906810 hsa-miR-4481 1 0 0
chr3:128906681|128906810 hsa-miR-4488 1 0 0
chr3:128906681|128906810 hsa-miR-4492 1 1 0
chr3:128906681|128906810 hsa-miR-4498 1 1 0
chr3:128906681|128906810 hsa-miR-4505 1 0 0
chr3:128906681|128906810 hsa-miR-4507 1 1 0
chr3:128906681|128906810 hsa-miR-4514 0 1 0
chr3:128906681|128906810 hsa-miR-4515 0 1 0
chr3:128906681|128906810 hsa-miR-1587 1 1 0
chr3:128906681|128906810 hsa-miR-4651 1 0 0
chr3:128906681|128906810 hsa-miR-4656 1 0 0
chr3:128906681|128906810 hsa-miR-4674 1 0 0
chr3:128906681|128906810 hsa-miR-4686 1 1 0
chr3:128906681|128906810 hsa-miR-4688 1 0 0
chr3:128906681|128906810 hsa-miR-4689 1 0 0
chr3:128906681|128906810 hsa-miR-4692 0 1 0
chr3:128906681|128906810 hsa-miR-4741 1 0 0
chr3:128906681|128906810 hsa-miR-5090 1 0 0
chr3:128906681|128906810 hsa-miR-5192 1 0 0
chr3:128906681|128906810 hsa-miR-5739 1 0 0
chr3:128906681|128906810 hsa-miR-5787 1 1 0
chr3:128906681|128906810 hsa-miR-6071 0 1 0
chr3:128906681|128906810 hsa-miR-6081 0 1 0
chr3:128906681|128906810 hsa-miR-6090 1 0 0
chr3:128906681|128906810 hsa-miR-6127 1 0 0
chr3:128906681|128906810 hsa-miR-6129 1 0 0
chr3:128906681|128906810 hsa-miR-6130 1 0 0
chr3:128906681|128906810 hsa-miR-6133 1 0 0
chr3:128906681|128906810 hsa-miR-7704 1 0 0
chr3:128906681|128906810 hsa-miR-8052 0 1 0
chr3:128906681|128906810 hsa-miR-8085 1 0 0
chr3:128906681|128906810 hsa-miR-8089 1 0 0
chr3:128906681|128906810 hsa-miR-12115 1 0 0
chr3:128906681|128906810 hsa-miR-150-3p 1 0 0
chr3:128906681|128906810 hsa-miR-370-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6765-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6861-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6894-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6728-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3692-5p 1 1 0
chr3:128906681|128906810 hsa-miR-8071 1 0 0
chr3:128906681|128906810 hsa-miR-1227-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3192-5p 1 1 0
chr3:128906681|128906810 hsa-miR-6873-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6880-5p 1 0 0
chr3:128906681|128906810 hsa-miR-7847-3p 1 0 0
chr3:128906681|128906810 hsa-miR-4653-3p 1 0 0
chr3:128906681|128906810 hsa-miR-4709-3p 1 1 0
chr3:128906681|128906810 hsa-miR-6730-5p 1 0 0
chr3:128906681|128906810 hsa-miR-4755-3p 0 1 0
chr3:128906681|128906810 hsa-miR-6890-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6727-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6721-5p 1 0 0
chr3:128906681|128906810 hsa-miR-5589-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6776-5p 1 0 0
chr3:128906681|128906810 hsa-miR-7845-5p 1 0 0
chr3:128906681|128906810 hsa-miR-503-5p 0 1 0
chr3:128906681|128906810 hsa-miR-3180-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6748-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6793-5p 1 1 0
chr3:128906681|128906810 hsa-miR-185-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6798-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6760-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6835-5p 1 0 0
chr3:128906681|128906810 hsa-miR-185-5p 1 0 0
chr3:128906681|128906810 hsa-miR-1229-5p 1 0 0
chr3:128906681|128906810 hsa-miR-4640-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3691-5p 1 0 0
chr3:128906681|128906810 hsa-miR-1228-5p 1 1 0
chr3:128906681|128906810 hsa-miR-296-3p 1 0 0
chr3:128906681|128906810 hsa-miR-4783-5p 0 1 0
chr3:128906681|128906810 hsa-miR-6749-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3202 1 0 0
chr3:128906681|128906810 hsa-miR-4446-3p 1 0 0
chr3:128906681|128906810 hsa-miR-3162-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6800-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6802-5p 1 0 0
chr3:128906681|128906810 hsa-miR-4740-5p 0 1 0
chr3:128906681|128906810 hsa-miR-6864-5p 1 0 0
chr3:128906681|128906810 hsa-miR-7112-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3158-3p 0 1 0
chr3:128906681|128906810 hsa-miR-4750-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3160-5p 0 1 0
chr3:128906681|128906810 hsa-miR-6509-5p 1 0 0
chr3:128906681|128906810 hsa-miR-4763-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6769b-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6787-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6816-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3180 1 0 0
chr3:128906681|128906810 hsa-miR-5001-5p 1 1 0
chr3:128906681|128906810 hsa-miR-6743-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6756-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6774-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6779-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6797-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6879-5p 1 0 0
chr3:128906681|128906810 hsa-miR-3620-5p 1 1 0
chr3:128906681|128906810 hsa-miR-6780b-5p 1 0 0
chr3:128906681|128906810 hsa-miR-1237-5p 1 0 0
chr3:128906681|128906810 hsa-miR-4632-5p 0 1 0
chr3:128906681|128906810 hsa-miR-4725-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6846-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6848-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6858-5p 1 1 0
chr3:128906681|128906810 hsa-miR-4436b-3p 1 0 0
chr3:128906681|128906810 hsa-miR-4758-5p 1 0 0
chr3:128906681|128906810 hsa-miR-10394-3p 1 1 0
chr3:128906681|128906810 hsa-miR-3940-5p 1 1 0
chr3:128906681|128906810 hsa-miR-6731-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6758-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6856-5p 1 0 0
chr3:128906681|128906810 hsa-miR-6799-3p 0 1 0
chr3:128906681|128906810 hsa-miR-4700-5p 1 0 0
chr3:128906681|128906810 hsa-miR-10400-3p 1 0 0
chr3:128906681|128906810 hsa-miR-6838-5p 0 1 0
chr3:128906681|128906810 hsa-miR-3913-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:128906681|128906810
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLLPESPSLSLHSPCASRSVPSGPGALYY
Nucleotide Sequence CTGCTGCTCCCAGAAAGCCCTTCACTCTCTCTTCATTCACCTTGTGCCAGCAGATCAGTCCCATCTGGGCCTGGCGCGCTCTATTAC
CircID chr3:128906681|128906810
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MPAPAHLAGLTAAPRKPFTLSSFTLCQQISPIWAWRALL
Nucleotide Sequence CTGCCTGCCCCAGCCCACCTAGCAGGGCTGACTGCTGCTCCCAGAAAGCCCTTCACTCTCTCTTCATTCACCTTGTGCCAGCAGATCAGTCCCATCTGGGCCTGGCGCGCTCTATTA
CircID chr3:128906681|128906810
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGLICWHKVNEERVKGFLGAAVSPARWAGAGSGFG
Nucleotide Sequence ATGGGACTGATCTGCTGGCACAAGGTGAATGAAGAGAGAGTGAAGGGCTTTCTGGGAGCAGCAGTCAGCCCTGCTAGGTGGGCTGGGGCAGGCAGTGGGTTTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab