CircRNA Information

General Information
circRNA Basic Information
CircID chr3:129034197|129034316
Strand -
CircType exon
Host Gene ENSG00000114654.7;
Algorism CIRI2;
Sequence TTACTTTGGTCACTTCGGCGGTGCCAACCATGCCCATACCCTGGGGGAGCTGGAGGCCTGCATTGCCATGCTGGTGGAGCAGCTGAGGACTCAGGGCTGCGGTGGGAGGACCCTGGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:129034197|129034316 hsa-miR-96-5p 0 0 1
chr3:129034197|129034316 hsa-miR-96-3p 0 0 1
chr3:129034197|129034316 hsa-miR-559 0 0 1
chr3:129034197|129034316 hsa-miR-634 0 0 1
chr3:129034197|129034316 hsa-miR-1271-5p 0 0 1
chr3:129034197|129034316 hsa-miR-1271-3p 0 0 1
chr3:129034197|129034316 hsa-miR-766-5p 0 0 1
chr3:129034197|129034316 hsa-miR-766-3p 0 0 1
chr3:129034197|129034316 hsa-miR-1226-5p 0 0 1
chr3:129034197|129034316 hsa-miR-1226-3p 0 0 1
chr3:129034197|129034316 hsa-miR-548j-5p 0 0 1
chr3:129034197|129034316 hsa-miR-548j-3p 0 0 1
chr3:129034197|129034316 hsa-miR-532-3p 0 1 1
chr3:129034197|129034316 hsa-miR-361-3p 0 1 1
chr3:129034197|129034316 hsa-miR-1224-3p 0 0 1
chr3:129034197|129034316 hsa-miR-1207-3p 0 0 1
chr3:129034197|129034316 hsa-miR-338-3p 0 0 1
chr3:129034197|129034316 hsa-miR-125a-5p 0 1 1
chr3:129034197|129034316 hsa-miR-548b-5p 0 0 1
chr3:129034197|129034316 hsa-miR-548d-5p 0 0 1
chr3:129034197|129034316 hsa-miR-548c-5p 0 0 1
chr3:129034197|129034316 hsa-miR-548a-5p 0 0 1
chr3:129034197|129034316 hsa-miR-548i 0 0 1
chr3:129034197|129034316 hsa-miR-1260 0 0 1
chr3:129034197|129034316 hsa-miR-1280 0 0 1
chr3:129034197|129034316 hsa-miR-125b 0 0 1
chr3:129034197|129034316 hsa-miR-548h 0 0 1
chr3:129034197|129034316 hsa-miR-1260a 0 1 0
chr3:129034197|129034316 hsa-miR-1260b 0 1 0
chr3:129034197|129034316 hsa-miR-4642 1 0 0
chr3:129034197|129034316 hsa-miR-7976 0 1 0
chr3:129034197|129034316 hsa-miR-6749-3p 1 1 0
chr3:129034197|129034316 hsa-miR-4726-3p 1 0 0
chr3:129034197|129034316 hsa-miR-6720-5p 1 0 0
chr3:129034197|129034316 hsa-miR-145-5p 1 1 0
chr3:129034197|129034316 hsa-miR-6762-3p 1 0 0
chr3:129034197|129034316 hsa-miR-3622b-5p 0 1 0
chr3:129034197|129034316 hsa-miR-6787-3p 1 1 0
chr3:129034197|129034316 hsa-miR-629-3p 0 1 0
chr3:129034197|129034316 hsa-miR-4632-3p 1 0 0
chr3:129034197|129034316 hsa-miR-6779-3p 0 1 0
chr3:129034197|129034316 hsa-miR-4650-5p 0 1 0
chr3:129034197|129034316 hsa-miR-6775-5p 1 0 0
chr3:129034197|129034316 hsa-miR-1915-3p 0 1 0
chr3:129034197|129034316 hsa-miR-4685-5p 1 0 0
chr3:129034197|129034316 hsa-miR-6792-3p 1 0 0
chr3:129034197|129034316 hsa-miR-10392-3p 1 0 0
chr3:129034197|129034316 hsa-miR-4691-5p 0 1 0
chr3:129034197|129034316 hsa-miR-6764-5p 0 1 0
chr3:129034197|129034316 hsa-miR-5195-3p 1 1 0
chr3:129034197|129034316 hsa-miR-6811-5p 0 1 0
chr3:129034197|129034316 hsa-miR-125b-5p 0 1 0
chr3:129034197|129034316 hsa-miR-1245b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:129034197|129034316
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MGELEACIAMLVEQLRTQGCGGRTLG
Nucleotide Sequence CTGGGGGAGCTGGAGGCCTGCATTGCCATGCTGGTGGAGCAGCTGAGGACTCAGGGCTGCGGTGGGAGGACCCTGGGG
CircID chr3:129034197|129034316
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MVTSAVPTMPIPWGSWRPALPCWWSS
Nucleotide Sequence TTGGTCACTTCGGCGGTGCCAACCATGCCCATACCCTGGGGGAGCTGGAGGCCTGCATTGCCATGCTGGTGGAGCAGCTGA
CircID chr3:129034197|129034316
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MSPQLLHQHGNAGLQLPQGMGMVGTAEVTKV
Nucleotide Sequence CTGAGTCCTCAGCTGCTCCACCAGCATGGCAATGCAGGCCTCCAGCTCCCCCAGGGTATGGGCATGGTTGGCACCGCCGAAGTGACCAAAGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab