CircRNA Information

General Information
circRNA Basic Information
CircID chr3:129977015|129977192
Strand +
CircType exon
Host Gene ENSG00000170893.3;
Algorism CIRI2;
Sequence CCAGGCTGCCCGCCGACCAGGGTGCTGCCGCTTTTCCTCAGCTCCCTGGCTCCTACTCAGGTCATCCAGGAGCCCCAGCAGAAGGCCCGCTTGACCATAGGCTCCCTGGGGCCCACAGGGGCCTCCCAGGGCCCTCTTGCCCGGATGCTGGCGTTTTTCAGGCATCAGGTCTTCCTCT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:129977015|129977192 hsa-miR-31-5p 0 0 1
chr3:129977015|129977192 hsa-miR-31-3p 0 0 1
chr3:129977015|129977192 hsa-miR-631 0 0 1
chr3:129977015|129977192 hsa-miR-708-5p 0 0 1
chr3:129977015|129977192 hsa-miR-708-3p 0 0 1
chr3:129977015|129977192 hsa-miR-920 1 1 1
chr3:129977015|129977192 hsa-miR-1237-5p 0 0 1
chr3:129977015|129977192 hsa-miR-1237-3p 0 0 1
chr3:129977015|129977192 hsa-miR-1291 0 0 1
chr3:129977015|129977192 hsa-miR-1255a 0 0 1
chr3:129977015|129977192 hsa-miR-296-5p 0 0 1
chr3:129977015|129977192 hsa-miR-28-5p 0 0 1
chr3:129977015|129977192 hsa-miR-338-3p 0 0 1
chr3:129977015|129977192 hsa-miR-1255b 0 0 1
chr3:129977015|129977192 hsa-miR-7 0 0 1
chr3:129977015|129977192 hsa-miR-1201 0 0 1
chr3:129977015|129977192 hsa-miR-637 1 0 0
chr3:129977015|129977192 hsa-miR-2861 1 0 0
chr3:129977015|129977192 hsa-miR-4296 0 1 0
chr3:129977015|129977192 hsa-miR-4322 0 1 0
chr3:129977015|129977192 hsa-miR-4270 1 1 0
chr3:129977015|129977192 hsa-miR-4292 0 1 0
chr3:129977015|129977192 hsa-miR-3915 0 1 0
chr3:129977015|129977192 hsa-miR-3916 0 1 0
chr3:129977015|129977192 hsa-miR-4656 1 1 0
chr3:129977015|129977192 hsa-miR-4686 0 1 0
chr3:129977015|129977192 hsa-miR-4739 1 0 0
chr3:129977015|129977192 hsa-miR-4767 1 0 0
chr3:129977015|129977192 hsa-miR-5787 1 0 0
chr3:129977015|129977192 hsa-miR-6090 1 0 0
chr3:129977015|129977192 hsa-miR-6127 1 0 0
chr3:129977015|129977192 hsa-miR-8089 1 0 0
chr3:129977015|129977192 hsa-miR-134-3p 0 1 0
chr3:129977015|129977192 hsa-miR-370-3p 1 0 0
chr3:129977015|129977192 hsa-miR-4687-3p 1 0 0
chr3:129977015|129977192 hsa-miR-6744-5p 0 1 0
chr3:129977015|129977192 hsa-miR-4722-5p 0 1 0
chr3:129977015|129977192 hsa-miR-505-5p 0 1 0
chr3:129977015|129977192 hsa-miR-6820-5p 0 1 0
chr3:129977015|129977192 hsa-miR-874-5p 0 1 0
chr3:129977015|129977192 hsa-miR-23b-5p 1 1 0
chr3:129977015|129977192 hsa-miR-6827-5p 1 0 0
chr3:129977015|129977192 hsa-miR-23a-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6798-5p 1 1 0
chr3:129977015|129977192 hsa-miR-5008-5p 1 1 0
chr3:129977015|129977192 hsa-miR-4793-5p 0 1 0
chr3:129977015|129977192 hsa-miR-4786-3p 1 0 0
chr3:129977015|129977192 hsa-miR-4640-5p 1 1 0
chr3:129977015|129977192 hsa-miR-6749-5p 1 1 0
chr3:129977015|129977192 hsa-miR-3160-3p 0 1 0
chr3:129977015|129977192 hsa-miR-193a-5p 1 0 0
chr3:129977015|129977192 hsa-miR-146b-3p 0 1 0
chr3:129977015|129977192 hsa-miR-7160-3p 0 1 0
chr3:129977015|129977192 hsa-miR-6869-5p 0 1 0
chr3:129977015|129977192 hsa-miR-6871-3p 0 1 0
chr3:129977015|129977192 hsa-miR-7113-5p 0 1 0
chr3:129977015|129977192 hsa-miR-1343-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6726-5p 1 1 0
chr3:129977015|129977192 hsa-miR-6754-5p 0 1 0
chr3:129977015|129977192 hsa-miR-6780b-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6836-5p 1 0 0
chr3:129977015|129977192 hsa-miR-10396a-5p 1 0 0
chr3:129977015|129977192 hsa-miR-10396b-5p 1 0 0
chr3:129977015|129977192 hsa-miR-328-5p 1 0 0
chr3:129977015|129977192 hsa-miR-4649-5p 1 0 0
chr3:129977015|129977192 hsa-miR-4725-3p 1 0 0
chr3:129977015|129977192 hsa-miR-4726-5p 1 1 0
chr3:129977015|129977192 hsa-miR-4745-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6729-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6777-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6848-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6858-5p 0 1 0
chr3:129977015|129977192 hsa-miR-6889-5p 1 1 0
chr3:129977015|129977192 hsa-miR-939-5p 1 1 0
chr3:129977015|129977192 hsa-miR-1238-5p 0 1 0
chr3:129977015|129977192 hsa-miR-4758-5p 1 1 0
chr3:129977015|129977192 hsa-miR-6724-5p 1 1 0
chr3:129977015|129977192 hsa-miR-6791-5p 1 0 0
chr3:129977015|129977192 hsa-miR-550a-5p 1 0 0
chr3:129977015|129977192 hsa-miR-10400-3p 1 1 0
chr3:129977015|129977192 hsa-miR-6718-5p 1 0 0
chr3:129977015|129977192 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:129977015|129977192
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MPLFLSSLAPTQVIQEPQQKARLTIGSLGPTGASQGPLARMLAFFRHQVFL
Nucleotide Sequence CTGCCGCTTTTCCTCAGCTCCCTGGCTCCTACTCAGGTCATCCAGGAGCCCCAGCAGAAGGCCCGCTTGACCATAGGCTCCCTGGGGCCCACAGGGGCCTCCCAGGGCCCTCTTGCCCGGATGCTGGCGTTTTTCAGGCATCAGGTCTTCCTC
CircID chr3:129977015|129977192
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MPADQGAAAFPQLPGSYSGHPGAPAEGPLDHRLPGAHRGLPGPSCPDAGVFQASGLP
Nucleotide Sequence CTGCCCGCCGACCAGGGTGCTGCCGCTTTTCCTCAGCTCCCTGGCTCCTACTCAGGTCATCCAGGAGCCCCAGCAGAAGGCCCGCTTGACCATAGGCTCCCTGGGGCCCACAGGGGCCTCCCAGGGCCCTCTTGCCCGGATGCTGGCGTTTTTCAGGCATCAGGTCTTCCT
CircID chr3:129977015|129977192
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MMPEKRQHPGKRALGGPCGPQGAYGQAGLLLGLLDDLSRSQGAEEKRQHPGRRAAW
Nucleotide Sequence CTGATGCCTGAAAAACGCCAGCATCCGGGCAAGAGGGCCCTGGGAGGCCCCTGTGGGCCCCAGGGAGCCTATGGTCAAGCGGGCCTTCTGCTGGGGCTCCTGGATGACCTGAGTAGGAGCCAGGGAGCTGAGGAAAAGCGGCAGCACCCTGGTCGGCGGGCAGCCTGG
CircID chr3:129977015|129977192
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MKNASIRARGPWEAPVGPREPMVKRAFCWGSWMT
Nucleotide Sequence CTGAAAAACGCCAGCATCCGGGCAAGAGGGCCCTGGGAGGCCCCTGTGGGCCCCAGGGAGCCTATGGTCAAGCGGGCCTTCTGCTGGGGCTCCTGGATGACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab