CircRNA Information

General Information
circRNA Basic Information
CircID chr3:133841309|133841665
Strand +
CircType exon
Host Gene ENSG00000154917.9;
Algorism CIRI2;
Sequence AGGCAACCATTGGGATTGACTTCTTGTCAAAAACCATGTACTTGGAGGACCGCACGGTGAGCACCTAATATCAGGACTGGGAGGGGCAGGGAGGGTTCCTTTGGGCTTATCCCCTAGGACCCTTAGCTGGGCACCACTGAGAGCACCTGCCGACACTAGGGGCTGGAGCTGGTGATGCCAGCATTGCAGAGCCCGGCTCTCCCAGTCCCCCGGACCAGGAGGACCTCACTGCCCCACTGACCCCTCTGCCCATGGTCCTGCCCTCCCTGAGACAGGTGCGACTGCAGCTCTGGGACACAGCTGGTCAGGAGAGGTTCCGCAGCCTGATCCCCAGCTACATCCGGGACTCCACGGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:133841309|133841665 hsa-miR-34a-5p 0 0 1
chr3:133841309|133841665 hsa-miR-34a-3p 0 0 1
chr3:133841309|133841665 hsa-miR-449a 0 0 1
chr3:133841309|133841665 hsa-miR-484 0 0 1
chr3:133841309|133841665 hsa-miR-558 0 0 1
chr3:133841309|133841665 hsa-miR-591 0 0 1
chr3:133841309|133841665 hsa-miR-604 0 0 1
chr3:133841309|133841665 hsa-miR-449b-5p 0 0 1
chr3:133841309|133841665 hsa-miR-449b-3p 0 0 1
chr3:133841309|133841665 hsa-miR-766-5p 0 0 1
chr3:133841309|133841665 hsa-miR-766-3p 0 0 1
chr3:133841309|133841665 hsa-miR-760 0 0 1
chr3:133841309|133841665 hsa-miR-1178-5p 0 0 1
chr3:133841309|133841665 hsa-miR-1178-3p 0 0 1
chr3:133841309|133841665 hsa-miR-1226-5p 0 0 1
chr3:133841309|133841665 hsa-miR-1226-3p 0 0 1
chr3:133841309|133841665 hsa-miR-1286 0 0 1
chr3:133841309|133841665 hsa-miR-1294 0 0 1
chr3:133841309|133841665 hsa-miR-1266-5p 0 0 1
chr3:133841309|133841665 hsa-miR-1266-3p 0 0 1
chr3:133841309|133841665 hsa-miR-1321 0 0 1
chr3:133841309|133841665 hsa-miR-486-3p 0 0 1
chr3:133841309|133841665 hsa-miR-1289 0 0 1
chr3:133841309|133841665 hsa-miR-324-3p 0 0 1
chr3:133841309|133841665 hsa-miR-34c-5p 0 0 1
chr3:133841309|133841665 hsa-miR-514 0 0 1
chr3:133841309|133841665 hsa-miR-612 1 0 0
chr3:133841309|133841665 hsa-miR-637 1 0 0
chr3:133841309|133841665 hsa-miR-663a 1 0 0
chr3:133841309|133841665 hsa-miR-658 1 0 0
chr3:133841309|133841665 hsa-miR-762 1 0 0
chr3:133841309|133841665 hsa-miR-764 1 0 0
chr3:133841309|133841665 hsa-miR-921 1 0 0
chr3:133841309|133841665 hsa-miR-1470 1 0 0
chr3:133841309|133841665 hsa-miR-1913 1 0 0
chr3:133841309|133841665 hsa-miR-3132 1 0 0
chr3:133841309|133841665 hsa-miR-3141 1 0 0
chr3:133841309|133841665 hsa-miR-3147 1 0 0
chr3:133841309|133841665 hsa-miR-3175 1 0 0
chr3:133841309|133841665 hsa-miR-3196 1 0 0
chr3:133841309|133841665 hsa-miR-4270 1 0 0
chr3:133841309|133841665 hsa-miR-3945 1 0 0
chr3:133841309|133841665 hsa-miR-4449 1 0 0
chr3:133841309|133841665 hsa-miR-4467 1 0 0
chr3:133841309|133841665 hsa-miR-1587 1 0 0
chr3:133841309|133841665 hsa-miR-4651 1 0 0
chr3:133841309|133841665 hsa-miR-4656 1 0 0
chr3:133841309|133841665 hsa-miR-4688 1 0 0
chr3:133841309|133841665 hsa-miR-4706 1 0 0
chr3:133841309|133841665 hsa-miR-4710 1 0 0
chr3:133841309|133841665 hsa-miR-4721 1 0 0
chr3:133841309|133841665 hsa-miR-4739 1 0 0
chr3:133841309|133841665 hsa-miR-5090 1 0 0
chr3:133841309|133841665 hsa-miR-5194 1 0 0
chr3:133841309|133841665 hsa-miR-5787 1 0 0
chr3:133841309|133841665 hsa-miR-6085 1 0 0
chr3:133841309|133841665 hsa-miR-6133 1 0 0
chr3:133841309|133841665 hsa-miR-6860 1 0 0
chr3:133841309|133841665 hsa-miR-7150 1 0 0
chr3:133841309|133841665 hsa-miR-7704 1 0 0
chr3:133841309|133841665 hsa-miR-7974 1 0 0
chr3:133841309|133841665 hsa-miR-8072 1 0 0
chr3:133841309|133841665 hsa-miR-9901 1 0 0
chr3:133841309|133841665 hsa-miR-12119 1 0 0
chr3:133841309|133841665 hsa-miR-12127 1 0 0
chr3:133841309|133841665 hsa-miR-12128 1 0 0
chr3:133841309|133841665 hsa-miR-211-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6749-3p 1 0 0
chr3:133841309|133841665 hsa-miR-18a-3p 1 0 0
chr3:133841309|133841665 hsa-miR-504-3p 1 0 0
chr3:133841309|133841665 hsa-miR-3150a-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6861-5p 1 0 0
chr3:133841309|133841665 hsa-miR-7106-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6825-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6720-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6799-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6089 1 0 0
chr3:133841309|133841665 hsa-miR-6757-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4722-5p 1 0 0
chr3:133841309|133841665 hsa-miR-593-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3622b-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6721-5p 1 0 0
chr3:133841309|133841665 hsa-miR-197-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3189-5p 1 0 0
chr3:133841309|133841665 hsa-miR-1915-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3180-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6796-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6798-5p 1 0 0
chr3:133841309|133841665 hsa-miR-2467-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6782-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6774-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6882-3p 1 0 0
chr3:133841309|133841665 hsa-miR-615-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6786-5p 1 0 0
chr3:133841309|133841665 hsa-miR-5088-5p 1 0 0
chr3:133841309|133841665 hsa-miR-7109-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4763-5p 1 0 0
chr3:133841309|133841665 hsa-miR-1229-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4640-5p 1 0 0
chr3:133841309|133841665 hsa-miR-885-3p 1 0 0
chr3:133841309|133841665 hsa-miR-1228-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6771-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6847-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4446-3p 1 0 0
chr3:133841309|133841665 hsa-miR-149-3p 1 0 0
chr3:133841309|133841665 hsa-miR-3616-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6824-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3162-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6769a-3p 1 0 0
chr3:133841309|133841665 hsa-miR-339-5p 1 0 0
chr3:133841309|133841665 hsa-miR-7112-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6752-3p 1 0 0
chr3:133841309|133841665 hsa-miR-3670 1 0 0
chr3:133841309|133841665 hsa-miR-1249-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6732-3p 1 0 0
chr3:133841309|133841665 hsa-miR-3162-3p 1 0 0
chr3:133841309|133841665 hsa-miR-10400-5p 1 0 0
chr3:133841309|133841665 hsa-miR-1207-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4763-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6769b-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6816-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6893-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3180 1 0 0
chr3:133841309|133841665 hsa-miR-5001-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6743-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6754-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6756-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6813-5p 1 0 0
chr3:133841309|133841665 hsa-miR-11181-3p 1 0 0
chr3:133841309|133841665 hsa-miR-1249-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6722-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6774-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6779-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6780a-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6797-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6808-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6879-5p 1 0 0
chr3:133841309|133841665 hsa-miR-7111-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3620-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4728-5p 1 0 0
chr3:133841309|133841665 hsa-miR-5196-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6780b-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6836-5p 1 0 0
chr3:133841309|133841665 hsa-miR-10396b-5p 1 0 0
chr3:133841309|133841665 hsa-miR-1909-3p 1 0 0
chr3:133841309|133841665 hsa-miR-328-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4632-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4725-3p 1 0 0
chr3:133841309|133841665 hsa-miR-4745-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6735-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6738-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6777-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6794-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6795-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6846-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6848-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6883-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6887-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6889-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4436b-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6831-5p 1 0 0
chr3:133841309|133841665 hsa-miR-939-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4758-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3085-5p 1 0 0
chr3:133841309|133841665 hsa-miR-3198 1 0 0
chr3:133841309|133841665 hsa-miR-6731-5p 1 0 0
chr3:133841309|133841665 hsa-miR-7843-5p 1 0 0
chr3:133841309|133841665 hsa-miR-1914-3p 1 0 0
chr3:133841309|133841665 hsa-miR-10398-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6891-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6785-5p 1 0 0
chr3:133841309|133841665 hsa-miR-6862-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6801-3p 1 0 0
chr3:133841309|133841665 hsa-miR-10400-3p 1 0 0
chr3:133841309|133841665 hsa-miR-3130-5p 1 0 0
chr3:133841309|133841665 hsa-miR-4723-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6512-3p 1 0 0
chr3:133841309|133841665 hsa-miR-6769b-3p 1 0 0
chr3:133841309|133841665 hsa-miR-1912-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:133841309|133841665
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MELVMPALQSPALPVPRTRRTSLPH
Nucleotide Sequence CTGGAGCTGGTGATGCCAGCATTGCAGAGCCCGGCTCTCCCAGTCCCCCGGACCAGGAGGACCTCACTGCCCCACTGA
CircID chr3:133841309|133841665
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MGGAGRVPLGLSPRTLSWAPLRAPADTRGWSW
Nucleotide Sequence CTGGGAGGGGCAGGGAGGGTTCCTTTGGGCTTATCCCCTAGGACCCTTAGCTGGGCACCACTGAGAGCACCTGCCGACACTAGGGGCTGGAGCTGGTGA
CircID chr3:133841309|133841665
ORF Type ORF3
Protein Length 70
Nucleotide Length 210
Protein Sequence MPTLGAGAGDASIAEPGSPSPPDQEDLTAPLTPLPMVLPSLRQVRLQLWDTAGQERFRSLIPSYIRDSTV
Nucleotide Sequence CTGCCGACACTAGGGGCTGGAGCTGGTGATGCCAGCATTGCAGAGCCCGGCTCTCCCAGTCCCCCGGACCAGGAGGACCTCACTGCCCCACTGACCCCTCTGCCCATGGTCCTGCCCTCCCTGAGACAGGTGCGACTGCAGCTCTGGGACACAGCTGGTCAGGAGAGGTTCCGCAGCCTGATCCCCAGCTACATCCGGGACTCCACGGTG
CircID chr3:133841309|133841665
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MQCWHHQLQPLVSAGALSGAQLRVLGDKPKGTLPAPPSPDIRCSPCGPPSTWFLTRSQSQWLP
Nucleotide Sequence CTGCAATGCTGGCATCACCAGCTCCAGCCCCTAGTGTCGGCAGGTGCTCTCAGTGGTGCCCAGCTAAGGGTCCTAGGGGATAAGCCCAAAGGAACCCTCCCTGCCCCTCCCAGTCCTGATATTAGGTGCTCACCGTGCGGTCCTCCAAGTACATGGTTTTTGACAAGAAGTCAATCCCAATGGTTGCCT
CircID chr3:133841309|133841665
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence MTSCVPELQSHLSQGGQDHGQRGQWGSEVLLVRGTGRAGLCNAGITSSSP
Nucleotide Sequence CTGACCAGCTGTGTCCCAGAGCTGCAGTCGCACCTGTCTCAGGGAGGGCAGGACCATGGGCAGAGGGGTCAGTGGGGCAGTGAGGTCCTCCTGGTCCGGGGGACTGGGAGAGCCGGGCTCTGCAATGCTGGCATCACCAGCTCCAGCCCCTAG
CircID chr3:133841309|133841665
ORF Type ORF6
Protein Length 48
Nucleotide Length 147
Protein Sequence MGRGVSGAVRSSWSGGLGEPGSAMLASPAPAPSVGRCSQWCPAKGPRG
Nucleotide Sequence ATGGGCAGAGGGGTCAGTGGGGCAGTGAGGTCCTCCTGGTCCGGGGGACTGGGAGAGCCGGGCTCTGCAATGCTGGCATCACCAGCTCCAGCCCCTAGTGTCGGCAGGTGCTCTCAGTGGTGCCCAGCTAAGGGTCCTAGGGGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab