CircRNA Information

General Information
circRNA Basic Information
CircID chr3:137010526|137010699
Strand -
CircType exon
Host Gene ENSG00000174564.11;
Algorism CIRI2;
Sequence CTACACACCTGCTAAACACACACACACAGAGTCTCTCTCTATATATACACACGTACACATAAATACACCCAGCACTTGCAAGGCTAGAGGGAAACTGGTGACACTCTACAGTCTGACTGATTCAGTGTTTCTGGAGAGCAGGACATAAATGTATGATGAGAATGATCAAGGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:137010526|137010699 hsa-miR-141-5p 0 0 1
chr3:137010526|137010699 hsa-miR-141-3p 0 0 1
chr3:137010526|137010699 hsa-miR-200a-5p 0 0 1
chr3:137010526|137010699 hsa-miR-200a-3p 0 0 1
chr3:137010526|137010699 hsa-miR-302a-5p 0 0 1
chr3:137010526|137010699 hsa-miR-302a-3p 0 0 1
chr3:137010526|137010699 hsa-miR-302b-5p 0 0 1
chr3:137010526|137010699 hsa-miR-302b-3p 0 0 1
chr3:137010526|137010699 hsa-miR-302c-5p 0 0 1
chr3:137010526|137010699 hsa-miR-302c-3p 0 0 1
chr3:137010526|137010699 hsa-miR-302d-5p 0 0 1
chr3:137010526|137010699 hsa-miR-302d-3p 0 0 1
chr3:137010526|137010699 hsa-miR-370-5p 0 0 1
chr3:137010526|137010699 hsa-miR-370-3p 0 0 1
chr3:137010526|137010699 hsa-miR-372-5p 0 0 1
chr3:137010526|137010699 hsa-miR-372-3p 0 0 1
chr3:137010526|137010699 hsa-miR-373-5p 0 0 1
chr3:137010526|137010699 hsa-miR-373-3p 0 0 1
chr3:137010526|137010699 hsa-miR-487a-5p 0 0 1
chr3:137010526|137010699 hsa-miR-487a-3p 0 0 1
chr3:137010526|137010699 hsa-miR-520e-5p 0 0 1
chr3:137010526|137010699 hsa-miR-520e-3p 0 0 1
chr3:137010526|137010699 hsa-miR-520b-5p 0 0 1
chr3:137010526|137010699 hsa-miR-520b-3p 0 0 1
chr3:137010526|137010699 hsa-miR-597-5p 0 0 1
chr3:137010526|137010699 hsa-miR-597-3p 0 0 1
chr3:137010526|137010699 hsa-miR-609 0 0 1
chr3:137010526|137010699 hsa-miR-766-5p 0 0 1
chr3:137010526|137010699 hsa-miR-766-3p 0 0 1
chr3:137010526|137010699 hsa-miR-1183 0 0 1
chr3:137010526|137010699 hsa-miR-1226-5p 0 0 1
chr3:137010526|137010699 hsa-miR-1226-3p 0 0 1
chr3:137010526|137010699 hsa-miR-1251-5p 0 0 1
chr3:137010526|137010699 hsa-miR-1251-3p 0 0 1
chr3:137010526|137010699 hsa-miR-302e 0 0 1
chr3:137010526|137010699 hsa-miR-512-3p 0 0 1
chr3:137010526|137010699 hsa-miR-485-3p 0 1 1
chr3:137010526|137010699 hsa-miR-520d-3p 0 0 1
chr3:137010526|137010699 hsa-miR-520a-3p 0 0 1
chr3:137010526|137010699 hsa-miR-520c-3p 0 0 1
chr3:137010526|137010699 hsa-miR-642 0 0 1
chr3:137010526|137010699 hsa-miR-1826 0 0 1
chr3:137010526|137010699 hsa-miR-760 0 1 0
chr3:137010526|137010699 hsa-miR-297 0 1 0
chr3:137010526|137010699 hsa-miR-3665 1 0 0
chr3:137010526|137010699 hsa-miR-4455 1 0 0
chr3:137010526|137010699 hsa-miR-4494 0 1 0
chr3:137010526|137010699 hsa-miR-8052 1 0 0
chr3:137010526|137010699 hsa-miR-210-3p 1 0 0
chr3:137010526|137010699 hsa-miR-6867-5p 1 1 0
chr3:137010526|137010699 hsa-miR-5589-5p 0 1 0
chr3:137010526|137010699 hsa-miR-296-3p 1 0 0
chr3:137010526|137010699 hsa-miR-574-5p 1 0 0
chr3:137010526|137010699 hsa-miR-1298-5p 1 0 0
chr3:137010526|137010699 hsa-miR-1287-3p 0 1 0
chr3:137010526|137010699 hsa-miR-6769b-5p 1 0 0
chr3:137010526|137010699 hsa-miR-7110-5p 1 0 0
chr3:137010526|137010699 hsa-miR-1909-3p 1 0 0
chr3:137010526|137010699 hsa-miR-6856-5p 1 0 0
chr3:137010526|137010699 hsa-miR-1185-1-3p 0 1 0
chr3:137010526|137010699 hsa-miR-1185-2-3p 0 1 0
chr3:137010526|137010699 hsa-miR-6790-5p 1 0 0
chr3:137010526|137010699 hsa-miR-9902 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:137010526|137010699
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MQVLGVFMCTCVYIERDSVCVCLAGV
Nucleotide Sequence TTGCAAGTGCTGGGTGTATTTATGTGTACGTGTGTATATATAGAGAGAGACTCTGTGTGTGTGTGTTTAGCAGGTGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab