CircRNA Information

General Information
circRNA Basic Information
CircID chr3:141260123|141287453
Strand +
CircType exon
Host Gene ENSG00000155893.12;
Algorism find_circ;CIRI2;DCC;
Sequence GACATGTTCCCGATTTGAGGTGAAACCATGAAGAGAAAATAGAATACTTAATAATGCTTTTCCGCAACCGCTTCTTGCTGCTGCTGGCCCTGGCTGCGCTGCTGGCCTTTGTGAGCCTCAGCCTGCAGTTCTCTGAGAAAACATCTGTGTGATGCCAGGAATTGTGTTGTTGCTGTCACCTGCCTTCTCTCCGTTTAACCACCTCATCCTGATGGGTGGGAGACAAGCAGTTGGCACCCACACCACCCAGGACAGCTGTGTGAGGAGGGGCATTTCTGTTGCAGTTTGAATGATGGAAAGAAGGGCAGGTGGCTCGAATTGGAAAAGAGGTCAAAAGAAGGTGGGCATCAGAAGTTTAAAAATATTCCAGATGGCAAATGAATTGTAAAATCTGAATCCTTTCCAAAAAGTGTGTCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAGTAGCAAGAGTCGAAAGAGAATCATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAGGTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGTTCATTCGCCACGGAGACAGGTACCCACTGTATGTCATTCCCAAAACAAAGCGACCAGAAATTGACTGCACTCTGGTGGCTAACAGGAAACCGTATCACCCAAAACTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCCCCTTGAACTCCTTGCCTCTTTACCCAAATCACCCATTGTGTGAGATGGGAGAGCTCACACAGACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:141260123|141287453 hsa-miR-143-5p 0 0 1
chr3:141260123|141287453 hsa-miR-143-3p 0 0 1
chr3:141260123|141287453 hsa-miR-377-5p 0 0 1
chr3:141260123|141287453 hsa-miR-377-3p 0 0 1
chr3:141260123|141287453 hsa-miR-660-5p 0 0 1
chr3:141260123|141287453 hsa-miR-660-3p 0 0 1
chr3:141260123|141287453 hsa-miR-1323 0 1 1
chr3:141260123|141287453 hsa-miR-1203 0 0 1
chr3:141260123|141287453 hsa-miR-548e-5p 0 0 1
chr3:141260123|141287453 hsa-miR-548e-3p 0 0 1
chr3:141260123|141287453 hsa-miR-548o-3p 0 0 1
chr3:141260123|141287453 hsa-miR-1324 0 0 1
chr3:141260123|141287453 hsa-miR-548o 0 0 1
chr3:141260123|141287453 hsa-miR-671-5p 0 0 1
chr3:141260123|141287453 hsa-miR-191-3p 0 1 1
chr3:141260123|141287453 hsa-miR-127-3p 0 1 1
chr3:141260123|141287453 hsa-miR-502-5p 0 0 1
chr3:141260123|141287453 hsa-miR-342-3p 0 1 1
chr3:141260123|141287453 hsa-miR-548a-3p 0 0 1
chr3:141260123|141287453 hsa-miR-548f 0 0 1
chr3:141260123|141287453 hsa-miR-147 0 0 1
chr3:141260123|141287453 hsa-miR-4780 0 1 0
chr3:141260123|141287453 hsa-miR-1915-5p 1 1 0
chr3:141260123|141287453 hsa-miR-6796-5p 0 1 0
chr3:141260123|141287453 hsa-miR-345-3p 1 0 0
chr3:141260123|141287453 hsa-miR-6818-5p 0 1 0
chr3:141260123|141287453 hsa-miR-3670 0 1 0
chr3:141260123|141287453 hsa-miR-3152-5p 0 1 0
chr3:141260123|141287453 hsa-miR-939-5p 1 0 0
chr3:141260123|141287453 hsa-miR-6819-3p 0 1 0
chr3:141260123|141287453 hsa-miR-6781-3p 0 1 0
chr3:141260123|141287453 hsa-miR-1912-3p 0 1 0
chr3:141260123|141287453 hsa-miR-373-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr3:141260123|141287453
ORF Type ORF1
Protein Length 130
Nucleotide Length 390
Protein Sequence MSSKSRKRIMPDPVTEPPVTDPVYEALLYCNIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPKLEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQT
Nucleotide Sequence ATGAGTAGCAAGAGTCGAAAGAGAATCATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAGGTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGTTCATTCGCCACGGAGACAGGTACCCACTGTATGTCATTCCCAAAACAAAGCGACCAGAAATTGACTGCACTCTGGTGGCTAACAGGAAACCGTATCACCCAAAACTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCCCCTTGAACTCCTTGCCTCTTTACCCAAATCACCCATTGTGTGAGATGGGAGAGCTCACACAGACA

CircID chr3:141260123|141287453
ORF Type ORF2
Protein Length 87
Nucleotide Length 261
Protein Sequence MKLFCTATSPAWPSAAWKVMPRIILSWSQCMCSFATETGTHCMSFPKQSDQKLTALWWLTGNRITQNWKLSLVTCQKDPEPLSKAP*
Nucleotide Sequence ATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAGGTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGTTCATTCGCCACGGAGACAGGTACCCACTGTATGTCATTCCCAAAACAAAGCGACCAGAAATTGACTGCACTCTGGTGGCTAACAGGAAACCGTATCACCCAAAACTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCCCCTTGA

CircID chr3:141260123|141287453
ORF Type ORF3
Protein Length 81
Nucleotide Length 243
Protein Sequence MMRGMTFHAALGHAGDVAVQKSFINGVCHRGLRHRVGHDSLSTLATHSILRSRHRDQVDTLFGKDSDFTIHLPSGIFLNF*
Nucleotide Sequence ATGATGCGGGGCATGACCTTCCATGCTGCGCTCGGCCACGCTGGGGATGTTGCAGTACAAAAGAGCTTCATAAACGGGGTCTGTCACAGGGGGCTCCGTCACAGGGTCGGGCATGATTCTCTTTCGACTCTTGCTACTCATTCCATTCTTAGGAGTCGACACCGGGATCAGGTGGACACACTTTTTGGAAAGGATTCAGATTTTACAATTCATTTGCCATCTGGAATATTTTTAAACTTCTGA

CircID chr3:141260123|141287453
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MPLLTQLSWVVWVPTACLPPIRMRWLNGEKAGDSNNTIPGITQMFSQRTAG*
Nucleotide Sequence ATGCCCCTCCTCACACAGCTGTCCTGGGTGGTGTGGGTGCCAACTGCTTGTCTCCCACCCATCAGGATGAGGTGGTTAAACGGAGAGAAGGCAGGTGACAGCAACAACACAATTCCTGGCATCACACAGATGTTTTCTCAGAGAACTGCAGGCTGA

CircID chr3:141260123|141287453
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MPGIVLLLSPAFSPFNHLILMGGRQAVGTHTTQDSCVRRGISVAV*
Nucleotide Sequence ATGCCAGGAATTGTGTTGTTGCTGTCACCTGCCTTCTCTCCGTTTAACCACCTCATCCTGATGGGTGGGAGACAAGCAGTTGGCACCCACACCACCCAGGACAGCTGTGTGAGGAGGGGCATTTCTGTTGCAGTTTGA

CircID chr3:141260123|141287453
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MILFRLLLLIPFLGVDTGIRWTHFLERIQILQFICHLEYF*
Nucleotide Sequence ATGATTCTCTTTCGACTCTTGCTACTCATTCCATTCTTAGGAGTCGACACCGGGATCAGGTGGACACACTTTTTGGAAAGGATTCAGATTTTACAATTCATTTGCCATCTGGAATATTTTTAA

CircID chr3:141260123|141287453
ORF Type ORF7
Protein Length 33
Nucleotide Length 99
Protein Sequence MLFRNRFLLLLALAALLAFVSLSLQFSEKTSV*
Nucleotide Sequence ATGCTTTTCCGCAACCGCTTCTTGCTGCTGCTGGCCCTGGCTGCGCTGCTGGCCTTTGTGAGCCTCAGCCTGCAGTTCTCTGAGAAAACATCTGTGTGA

CircID chr3:141260123|141287453
ORF Type ORF8
Protein Length 33
Nucleotide Length 99
Protein Sequence MMERRAGGSNWKRGQKKVGIRSLKIFQMANEL*
Nucleotide Sequence ATGATGGAAAGAAGGGCAGGTGGCTCGAATTGGAAAAGAGGTCAAAAGAAGGTGGGCATCAGAAGTTTAAAAATATTCCAGATGGCAAATGAATTGTAA

CircID chr3:141260123|141287453
ORF Type ORF9
Protein Length 53
Nucleotide Length 159
Protein Sequence LTSFPIRATCPSFHHSNCNRNAPPHTAVLGGVGANCLSPTHQDEVVKRREGR*
Nucleotide Sequence TTGACCTCTTTTCCAATTCGAGCCACCTGCCCTTCTTTCCATCATTCAAACTGCAACAGAAATGCCCCTCCTCACACAGCTGTCCTGGGTGGTGTGGGTGCCAACTGCTTGTCTCCCACCCATCAGGATGAGGTGGTTAAACGGAGAGAAGGCAGGTGA

CircID chr3:141260123|141287453
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MGDLGKEARSSRGFRKRLRILLTCD
Nucleotide Sequence ATGGGTGATTTGGGTAAAGAGGCAAGGAGTTCAAGGGGCTTTCGAAAGAGGCTCCGGATCCTTTTGACATGTGACTAA

CircID chr3:141260123|141287453
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MCELSHLTQWVIWVKRQGVQGAFERGSGSF
Nucleotide Sequence CTGTGTGAGCTCTCCCATCTCACACAATGGGTGATTTGGGTAAAGAGGCAAGGAGTTCAAGGGGCTTTCGAAAGAGGCTCCGGATCCTTTTGA

CircID chr3:141260123|141287453
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQT
Nucleotide Sequence CTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCCCCTTGAACTCCTTGCCTCTTTACCCAAATCACCCATTGTGTGAGATGGGAGAGCTCACACAGACA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:141260123|141287453 MOV10 17 0 1
chr3:141260123|141287453 FUS 5 1 2
chr3:141260123|141287453 CELF2 0 0 2
chr3:141260123|141287453 PUM2 0 0 1
chr3:141260123|141287453 FMR1 17 0 1
chr3:141260123|141287453 YTHDF1 6 0 0
chr3:141260123|141287453 UPF1 3 0 0
chr3:141260123|141287453 TAF15 0 2 0
chr3:141260123|141287453 CAPRIN1 9 0 0
chr3:141260123|141287453 CPSF7 18 0 3
chr3:141260123|141287453 CPSF6 16 0 4
chr3:141260123|141287453 NUDT21 2 0 0
chr3:141260123|141287453 CPSF4 2 0 0
chr3:141260123|141287453 CPSF3 3 0 0
chr3:141260123|141287453 CPSF1 1 0 0
chr3:141260123|141287453 ELAVL1 37 0 3
chr3:141260123|141287453 EIF3H 1 0 0
chr3:141260123|141287453 SRSF1 3 1 2
chr3:141260123|141287453 NOP58 1 0 1
chr3:141260123|141287453 U2AF2 3 0 0
chr3:141260123|141287453 HNRNPU 3 0 0
chr3:141260123|141287453 TIAL1 1 0 0
chr3:141260123|141287453 FIP1L1 5 0 1
chr3:141260123|141287453 PTBP1 3 0 0
chr3:141260123|141287453 HNRNPC 37 1 9
chr3:141260123|141287453 HNRNPD 2 0 0
chr3:141260123|141287453 DDX3X 14 0 0
chr3:141260123|141287453 ZC3H7B 26 1 0
chr3:141260123|141287453 HNRNPA1 7 0 0
chr3:141260123|141287453 LIN28B 12 0 2
chr3:141260123|141287453 LIN28A 1 0 0
chr3:141260123|141287453 RANGAP1 1 0 0
chr3:141260123|141287453 FXR1 3 0 0
chr3:141260123|141287453 FXR2 2 0 0
chr3:141260123|141287453 IGF2BP1 8 0 0
chr3:141260123|141287453 DICER1 1 0 0
chr3:141260123|141287453 IGF2BP3 10 0 0
chr3:141260123|141287453 IGF2BP2 4 0 0
chr3:141260123|141287453 TARDBP 15 0 2
chr3:141260123|141287453 YTHDC1 8 0 0
chr3:141260123|141287453 BUD13 1 0 0
chr3:141260123|141287453 RBFOX2 2 0 0
chr3:141260123|141287453 RBM47 1 0 0
chr3:141260123|141287453 RTCB 1 0 0
chr3:141260123|141287453 CSTF2T 8 0 2
chr3:141260123|141287453 CSTF2 6 0 2
chr3:141260123|141287453 RNF219 0 0 1
chr3:141260123|141287453 WDR33 4 0 0
chr3:141260123|141287453 ALKBH5 2 0 0
chr3:141260123|141287453 ATXN2 44 0 6
chr3:141260123|141287453 EWSR1 4 0 0
chr3:141260123|141287453 EIF4A3 1 3 3
chr3:141260123|141287453 AGO2 1 0 2