CircRNA Information

General Information
circRNA Basic Information
CircID chr3:14158132|14158325
Strand -
CircType exon
Host Gene ENSG00000154767.13;
Algorism CIRI2;
Sequence CTCTGTGTGACATCTCGGACCCAGCCGTCACTGTCAATGCCCACCACATAGGTCATGGGCTTGGTGGCGTACTTGTAACAGGTCAGAGGCTGGCCCACCACACCGTGCACACAGTCTACACATACCCACTTTTCCTCCTGCTCACAGAACACCTCTAGCCACTGGTCTATACCAGCTATGCTTCTTTTTTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:14158132|14158325 hsa-miR-192-5p 0 0 1
chr3:14158132|14158325 hsa-miR-192-3p 0 0 1
chr3:14158132|14158325 hsa-miR-215-5p 0 0 1
chr3:14158132|14158325 hsa-miR-215-3p 0 0 1
chr3:14158132|14158325 hsa-miR-377-5p 0 0 1
chr3:14158132|14158325 hsa-miR-377-3p 0 0 1
chr3:14158132|14158325 hsa-miR-631 0 0 1
chr3:14158132|14158325 hsa-miR-892a 0 0 1
chr3:14158132|14158325 hsa-miR-541-5p 0 0 1
chr3:14158132|14158325 hsa-miR-541-3p 0 0 1
chr3:14158132|14158325 hsa-miR-1256 0 0 1
chr3:14158132|14158325 hsa-miR-299-3p 0 0 1
chr3:14158132|14158325 hsa-miR-654-5p 0 0 1
chr3:14158132|14158325 hsa-miR-151-3p 0 0 1
chr3:14158132|14158325 hsa-miR-557 1 0 0
chr3:14158132|14158325 hsa-miR-765 1 0 0
chr3:14158132|14158325 hsa-miR-297 1 0 0
chr3:14158132|14158325 hsa-miR-1293 1 0 0
chr3:14158132|14158325 hsa-miR-3138 1 0 0
chr3:14158132|14158325 hsa-miR-3148 1 0 0
chr3:14158132|14158325 hsa-miR-4322 1 0 0
chr3:14158132|14158325 hsa-miR-3652 1 0 0
chr3:14158132|14158325 hsa-miR-4430 1 0 0
chr3:14158132|14158325 hsa-miR-4468 1 0 0
chr3:14158132|14158325 hsa-miR-4491 1 0 0
chr3:14158132|14158325 hsa-miR-4494 1 0 0
chr3:14158132|14158325 hsa-miR-4689 1 0 0
chr3:14158132|14158325 hsa-miR-4739 1 0 0
chr3:14158132|14158325 hsa-miR-6133 1 0 0
chr3:14158132|14158325 hsa-miR-6165 1 0 0
chr3:14158132|14158325 hsa-miR-6860 1 0 0
chr3:14158132|14158325 hsa-miR-7702 1 0 0
chr3:14158132|14158325 hsa-miR-4433a-3p 1 0 0
chr3:14158132|14158325 hsa-miR-7106-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6894-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6799-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6510-5p 1 0 0
chr3:14158132|14158325 hsa-miR-8071 1 0 0
chr3:14158132|14158325 hsa-miR-766-5p 1 0 0
chr3:14158132|14158325 hsa-miR-4695-5p 1 0 0
chr3:14158132|14158325 hsa-miR-4722-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6730-5p 1 0 0
chr3:14158132|14158325 hsa-miR-7154-3p 1 0 0
chr3:14158132|14158325 hsa-miR-6721-5p 1 0 0
chr3:14158132|14158325 hsa-miR-197-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6748-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6772-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6798-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6782-5p 1 0 0
chr3:14158132|14158325 hsa-miR-1226-5p 1 0 0
chr3:14158132|14158325 hsa-miR-1229-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6771-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6781-5p 1 0 0
chr3:14158132|14158325 hsa-miR-574-5p 1 0 0
chr3:14158132|14158325 hsa-miR-7112-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6869-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6792-5p 1 0 0
chr3:14158132|14158325 hsa-miR-1207-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6769b-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6769a-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6803-5p 1 0 0
chr3:14158132|14158325 hsa-miR-1249-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6722-3p 1 0 0
chr3:14158132|14158325 hsa-miR-6751-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6797-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6879-5p 1 0 0
chr3:14158132|14158325 hsa-miR-4745-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6794-5p 1 0 0
chr3:14158132|14158325 hsa-miR-6858-5p 1 0 0
chr3:14158132|14158325 hsa-miR-4436b-3p 1 0 0
chr3:14158132|14158325 hsa-miR-4758-5p 1 0 0
chr3:14158132|14158325 hsa-miR-3173-3p 1 0 0
chr3:14158132|14158325 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:14158132|14158325
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence LCDISDPAVTVNAHHIGHGLGGVLVTGQRLAHHTVHTVYTYPLFLLLTEHL
Nucleotide Sequence CTGTGTGACATCTCGGACCCAGCCGTCACTGTCAATGCCCACCACATAGGTCATGGGCTTGGTGGCGTACTTGTAACAGGTCAGAGGCTGGCCCACCACACCGTGCACACAGTCTACACATACCCACTTTTCCTCCTGCTCACAGAACACCTCTAG
CircID chr3:14158132|14158325
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MTCYKYATKPMTYVVGIDSDGWVRDVTQ
Nucleotide Sequence CTGACCTGTTACAAGTACGCCACCAAGCCCATGACCTATGTGGTGGGCATTGACAGTGACGGCTGGGTCCGAGATGTCACACAG
CircID chr3:14158132|14158325
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MCRLCARCGGPASDLLQVRHQAHDLCGGH
Nucleotide Sequence ATGTGTAGACTGTGTGCACGGTGTGGTGGGCCAGCCTCTGACCTGTTACAAGTACGCCACCAAGCCCATGACCTATGTGGTGGGCATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab