CircRNA Information

General Information
circRNA Basic Information
CircID chr3:141963812|141963963
Strand -
CircType exon
Host Gene ENSG00000114126.16;
Algorism CIRI2;
Sequence TTGTCACTGGAGATGCTGCAATCTATGACTGTTTTTCTGCTTGTATTGATGATTATGAATGGCAGCTGAATGGTAGAGTTCAGAGCCGGCGGGCCCTGGTTTTGCTGCTCATTTTGTCGATTTCTCTGTACCAGGTTTTTGAAAGCGATTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:141963812|141963963 hsa-miR-15a-5p 0 0 1
chr3:141963812|141963963 hsa-miR-15a-3p 0 0 1
chr3:141963812|141963963 hsa-miR-22-5p 0 0 1
chr3:141963812|141963963 hsa-miR-22-3p 0 0 1
chr3:141963812|141963963 hsa-miR-107 0 1 1
chr3:141963812|141963963 hsa-miR-212-5p 0 0 1
chr3:141963812|141963963 hsa-miR-212-3p 0 0 1
chr3:141963812|141963963 hsa-miR-15b-5p 0 0 1
chr3:141963812|141963963 hsa-miR-15b-3p 0 0 1
chr3:141963812|141963963 hsa-miR-132-5p 0 0 1
chr3:141963812|141963963 hsa-miR-132-3p 0 0 1
chr3:141963812|141963963 hsa-miR-195-5p 0 0 1
chr3:141963812|141963963 hsa-miR-195-3p 0 0 1
chr3:141963812|141963963 hsa-miR-381-5p 0 0 1
chr3:141963812|141963963 hsa-miR-381-3p 0 0 1
chr3:141963812|141963963 hsa-miR-424-5p 0 0 1
chr3:141963812|141963963 hsa-miR-424-3p 0 0 1
chr3:141963812|141963963 hsa-miR-376b-5p 0 0 1
chr3:141963812|141963963 hsa-miR-376b-3p 0 0 1
chr3:141963812|141963963 hsa-miR-497-5p 0 0 1
chr3:141963812|141963963 hsa-miR-497-3p 0 0 1
chr3:141963812|141963963 hsa-miR-539-5p 0 0 1
chr3:141963812|141963963 hsa-miR-539-3p 0 0 1
chr3:141963812|141963963 hsa-miR-545-5p 0 0 1
chr3:141963812|141963963 hsa-miR-545-3p 0 0 1
chr3:141963812|141963963 hsa-miR-607 0 0 1
chr3:141963812|141963963 hsa-miR-618 0 0 1
chr3:141963812|141963963 hsa-miR-1301-5p 0 0 1
chr3:141963812|141963963 hsa-miR-1301-3p 0 0 1
chr3:141963812|141963963 hsa-miR-766-5p 0 0 1
chr3:141963812|141963963 hsa-miR-766-3p 0 0 1
chr3:141963812|141963963 hsa-miR-300 0 0 1
chr3:141963812|141963963 hsa-miR-760 0 1 1
chr3:141963812|141963963 hsa-miR-548p 0 0 1
chr3:141963812|141963963 hsa-miR-1825 0 0 1
chr3:141963812|141963963 hsa-miR-199a-5p 0 0 1
chr3:141963812|141963963 hsa-miR-490-3p 0 0 1
chr3:141963812|141963963 hsa-miR-1207-3p 0 0 1
chr3:141963812|141963963 hsa-miR-199b-5p 0 0 1
chr3:141963812|141963963 hsa-miR-548d-3p 0 0 1
chr3:141963812|141963963 hsa-miR-103 0 0 1
chr3:141963812|141963963 hsa-miR-16 0 0 1
chr3:141963812|141963963 hsa-miR-376a 0 0 1
chr3:141963812|141963963 hsa-miR-596 1 0 0
chr3:141963812|141963963 hsa-miR-638 1 0 0
chr3:141963812|141963963 hsa-miR-663b 1 0 0
chr3:141963812|141963963 hsa-miR-1538 1 0 0
chr3:141963812|141963963 hsa-miR-2861 1 0 0
chr3:141963812|141963963 hsa-miR-3163 0 1 0
chr3:141963812|141963963 hsa-miR-3609 0 1 0
chr3:141963812|141963963 hsa-miR-4539 0 1 0
chr3:141963812|141963963 hsa-miR-4698 0 1 0
chr3:141963812|141963963 hsa-miR-12113 0 1 0
chr3:141963812|141963963 hsa-miR-659-3p 1 0 0
chr3:141963812|141963963 hsa-miR-103a-3p 0 1 0
chr3:141963812|141963963 hsa-miR-7160-3p 0 1 0
chr3:141963812|141963963 hsa-miR-1296-5p 1 0 0
chr3:141963812|141963963 hsa-miR-4632-5p 1 0 0
chr3:141963812|141963963 hsa-miR-10394-3p 1 0 0
chr3:141963812|141963963 hsa-miR-6724-5p 1 0 0
chr3:141963812|141963963 hsa-miR-6837-5p 0 1 0
chr3:141963812|141963963 hsa-miR-6838-5p 0 1 0
chr3:141963812|141963963 hsa-miR-4315 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:141963812|141963963
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MVEFRAGGPWFCCSFCRFLCTRFLKAI
Nucleotide Sequence ATGGTAGAGTTCAGAGCCGGCGGGCCCTGGTTTTGCTGCTCATTTTGTCGATTTCTCTGTACCAGGTTTTTGAAAGCGATT
CircID chr3:141963812|141963963
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MNGRVQSRRALVLLLILSISLYQVFESDL
Nucleotide Sequence CTGAATGGTAGAGTTCAGAGCCGGCGGGCCCTGGTTTTGCTGCTCATTTTGTCGATTTCTCTGTACCAGGTTTTTGAAAGCGATTTG
CircID chr3:141963812|141963963
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSD
Nucleotide Sequence CTGGTACAGAGAAATCGACAAAATGAGCAGCAAAACCAGGGCCCGCCGGCTCTGAACTCTACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAACAGTCATAGATTGCAGCATCTCCAGTGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab