CircRNA Information

General Information
circRNA Basic Information
CircID chr3:14479344|14479466
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACCCTCTTCTTTTAGGATGCCTTGGCCCCGCACAGGCTGGCTCCTCTGCCAGAAATGCCCTTCTTGTTTTCTACTCCTGACAAATTCCTACTTATCCTTCAAAACTCAACTCAAGCTAACTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:14479344|14479466 hsa-miR-562 0 0 1
chr3:14479344|14479466 hsa-miR-570-5p 0 0 1
chr3:14479344|14479466 hsa-miR-570-3p 0 0 1
chr3:14479344|14479466 hsa-miR-571 1 0 1
chr3:14479344|14479466 hsa-miR-147b-5p 0 0 1
chr3:14479344|14479466 hsa-miR-147b-3p 0 0 1
chr3:14479344|14479466 hsa-miR-744-5p 0 0 1
chr3:14479344|14479466 hsa-miR-744-3p 0 0 1
chr3:14479344|14479466 hsa-miR-1252-5p 0 0 1
chr3:14479344|14479466 hsa-miR-1252-3p 0 0 1
chr3:14479344|14479466 hsa-miR-219-1-3p 0 0 1
chr3:14479344|14479466 hsa-miR-1253 1 0 0
chr3:14479344|14479466 hsa-miR-3132 1 0 0
chr3:14479344|14479466 hsa-miR-3154 0 1 0
chr3:14479344|14479466 hsa-miR-3185 1 0 0
chr3:14479344|14479466 hsa-miR-4259 1 0 0
chr3:14479344|14479466 hsa-miR-4516 1 0 0
chr3:14479344|14479466 hsa-miR-4656 1 0 0
chr3:14479344|14479466 hsa-miR-4688 1 0 0
chr3:14479344|14479466 hsa-miR-4706 1 0 0
chr3:14479344|14479466 hsa-miR-4739 1 0 0
chr3:14479344|14479466 hsa-miR-6090 1 0 0
chr3:14479344|14479466 hsa-miR-12128 1 0 0
chr3:14479344|14479466 hsa-miR-4433b-3p 1 0 0
chr3:14479344|14479466 hsa-miR-128-1-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4433a-3p 1 1 0
chr3:14479344|14479466 hsa-miR-6894-5p 1 0 0
chr3:14479344|14479466 hsa-miR-219a-1-3p 1 0 0
chr3:14479344|14479466 hsa-miR-7847-3p 1 0 0
chr3:14479344|14479466 hsa-miR-6746-5p 1 0 0
chr3:14479344|14479466 hsa-miR-197-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6849-3p 0 1 0
chr3:14479344|14479466 hsa-miR-3151-5p 1 0 0
chr3:14479344|14479466 hsa-miR-3180-3p 1 0 0
chr3:14479344|14479466 hsa-miR-6798-5p 1 0 0
chr3:14479344|14479466 hsa-miR-2467-3p 0 1 0
chr3:14479344|14479466 hsa-miR-5006-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6858-3p 0 1 0
chr3:14479344|14479466 hsa-miR-1226-5p 1 0 0
chr3:14479344|14479466 hsa-miR-193b-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4640-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6771-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6834-5p 1 0 0
chr3:14479344|14479466 hsa-miR-3616-3p 1 1 0
chr3:14479344|14479466 hsa-miR-3162-5p 1 0 0
chr3:14479344|14479466 hsa-miR-664b-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6811-3p 0 1 0
chr3:14479344|14479466 hsa-miR-4727-3p 1 0 0
chr3:14479344|14479466 hsa-miR-1914-5p 0 1 0
chr3:14479344|14479466 hsa-miR-3664-3p 1 1 0
chr3:14479344|14479466 hsa-miR-1207-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4763-3p 1 0 0
chr3:14479344|14479466 hsa-miR-6812-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6775-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6743-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6756-5p 1 0 0
chr3:14479344|14479466 hsa-miR-10401-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6722-3p 1 0 0
chr3:14479344|14479466 hsa-miR-6763-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6797-5p 1 0 0
chr3:14479344|14479466 hsa-miR-10396a-5p 1 0 0
chr3:14479344|14479466 hsa-miR-10396b-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4632-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4726-5p 1 0 0
chr3:14479344|14479466 hsa-miR-4749-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6735-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6738-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6845-5p 1 1 0
chr3:14479344|14479466 hsa-miR-939-5p 1 1 0
chr3:14479344|14479466 hsa-miR-7843-5p 1 0 0
chr3:14479344|14479466 hsa-miR-3679-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6849-5p 1 0 0
chr3:14479344|14479466 hsa-miR-6762-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:14479344|14479466
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MAPHRLAPLPEMPFLFSTPDKFLLILQNSTQANS
Nucleotide Sequence TTGGCCCCGCACAGGCTGGCTCCTCTGCCAGAAATGCCCTTCTTGTTTTCTACTCCTGACAAATTCCTACTTATCCTTCAAAACTCAACTCAAGCTAACTCC
CircID chr3:14479344|14479466
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPWPRTGWLLCQKCPSCFLLLTNSYLSFKTQLKLT
Nucleotide Sequence ATGCCTTGGCCCCGCACAGGCTGGCTCCTCTGCCAGAAATGCCCTTCTTGTTTTCTACTCCTGACAAATTCCTACTTATCCTTCAAAACTCAACTCAAGCTAACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab