CircRNA Information

General Information
circRNA Basic Information
CircID chr3:148844502|148844758
Strand +
CircType exon
Host Gene ENSG00000153002.10;
Algorism CIRI2;
Sequence CAGCATCAAAATTTCTGTTGGGGTCTGTGCCAATGCAGCTAGATCCAGTATGGGTGGAGCGAGTCTTTCTCCAAAATCGGCTCTGAAAGTGGACTACATAGTTAGGACAAATATAATAGAGAGGCGTTGGTTTTAATTTCATCAGCCTCTCTCAGTATTGGTGCATATACCTTGGTCCAGGTGTAGATGTAGCCATCAATATTGAGCACAGGCAGGACATAAAAGTCTAACTTGTCGAGAAGCTCTGTCACTTGGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:148844502|148844758 hsa-miR-22-5p 0 0 1
chr3:148844502|148844758 hsa-miR-22-3p 0 0 1
chr3:148844502|148844758 hsa-miR-33a-5p 0 0 1
chr3:148844502|148844758 hsa-miR-33a-3p 0 0 1
chr3:148844502|148844758 hsa-miR-96-5p 0 0 1
chr3:148844502|148844758 hsa-miR-96-3p 0 0 1
chr3:148844502|148844758 hsa-miR-221-5p 0 0 1
chr3:148844502|148844758 hsa-miR-221-3p 0 0 1
chr3:148844502|148844758 hsa-miR-222-5p 0 0 1
chr3:148844502|148844758 hsa-miR-222-3p 0 0 1
chr3:148844502|148844758 hsa-miR-200b-5p 0 0 1
chr3:148844502|148844758 hsa-miR-200b-3p 0 0 1
chr3:148844502|148844758 hsa-miR-200c-5p 0 0 1
chr3:148844502|148844758 hsa-miR-200c-3p 0 0 1
chr3:148844502|148844758 hsa-miR-429 0 0 1
chr3:148844502|148844758 hsa-miR-614 0 0 1
chr3:148844502|148844758 hsa-miR-619-5p 0 0 1
chr3:148844502|148844758 hsa-miR-619-3p 0 0 1
chr3:148844502|148844758 hsa-miR-620 0 0 1
chr3:148844502|148844758 hsa-miR-33b-5p 0 0 1
chr3:148844502|148844758 hsa-miR-33b-3p 0 0 1
chr3:148844502|148844758 hsa-miR-1271-5p 0 0 1
chr3:148844502|148844758 hsa-miR-1271-3p 0 0 1
chr3:148844502|148844758 hsa-miR-1243 0 0 1
chr3:148844502|148844758 hsa-miR-1270 0 0 1
chr3:148844502|148844758 hsa-miR-767-5p 0 0 1
chr3:148844502|148844758 hsa-miR-485-5p 0 0 1
chr3:148844502|148844758 hsa-miR-516a-5p 0 0 1
chr3:148844502|148844758 hsa-miR-502-3p 0 0 1
chr3:148844502|148844758 hsa-miR-501-3p 0 0 1
chr3:148844502|148844758 hsa-miR-542-3p 0 0 1
chr3:148844502|148844758 hsa-miR-768-5p 0 0 1
chr3:148844502|148844758 hsa-miR-151-3p 0 0 1
chr3:148844502|148844758 hsa-miR-564 1 0 0
chr3:148844502|148844758 hsa-miR-1470 1 0 0
chr3:148844502|148844758 hsa-miR-3918 1 0 0
chr3:148844502|148844758 hsa-miR-3929 0 1 0
chr3:148844502|148844758 hsa-miR-103a-2-5p 1 0 0
chr3:148844502|148844758 hsa-miR-150-3p 1 0 0
chr3:148844502|148844758 hsa-miR-3130-3p 0 1 0
chr3:148844502|148844758 hsa-miR-2277-3p 1 0 0
chr3:148844502|148844758 hsa-miR-3690 0 1 0
chr3:148844502|148844758 hsa-miR-4776-5p 0 1 0
chr3:148844502|148844758 hsa-miR-2355-3p 1 1 0
chr3:148844502|148844758 hsa-miR-6761-5p 0 1 0
chr3:148844502|148844758 hsa-miR-1255b-2-3p 1 0 0
chr3:148844502|148844758 hsa-miR-500a-3p 0 1 0
chr3:148844502|148844758 hsa-miR-6758-5p 0 1 0
chr3:148844502|148844758 hsa-miR-6884-5p 0 1 0
chr3:148844502|148844758 hsa-miR-323b-5p 1 0 0
chr3:148844502|148844758 hsa-miR-103a-1-5p 1 0 0
chr3:148844502|148844758 hsa-miR-195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:148844502|148844758
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MGGASLSPKSALKVDYIVRTNIIERRWF
Nucleotide Sequence ATGGGTGGAGCGAGTCTTTCTCCAAAATCGGCTCTGAAAGTGGACTACATAGTTAGGACAAATATAATAGAGAGGCGTTGGTTTTAA
CircID chr3:148844502|148844758
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MPVLNIDGYIYTWTKVYAPILREADEIKTNASLLYLS
Nucleotide Sequence CTGCCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATATGCACCAATACTGAGAGAGGCTGATGAAATTAAAACCAACGCCTCTCTATTATATTTGTCCTAA
CircID chr3:148844502|148844758
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MMKLKPTPLYYICPNYVVHFQSRFWRKTRSTHTGSSCIGTDPNRNFDA
Nucleotide Sequence CTGATGAAATTAAAACCAACGCCTCTCTATTATATTTGTCCTAACTATGTAGTCCACTTTCAGAGCCGATTTTGGAGAAAGACTCGCTCCACCCATACTGGATCTAGCTGCATTGGCACAGACCCCAACAGAAATTTTGATGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab