CircRNA Information

General Information
circRNA Basic Information
CircID chr3:149333986|149334217
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCTGACCTCAGATGATCCACCCGCCTCAGCCTCTCAAAGTGTTGAGATTACAGGCTTGAGCCATTGCGCCAGCCCTACCTTTGTTTTCTTAATAGTAGGAAAAATATGCCTTTATTTCTGTTATGATTTTTCAGAGAGGTAGAGATAATAGATGCAAACTCTTGGAAGGAAAGCTGTACTGATCTAACCAAGATATTTTGTTTTTCTCATCCACCAGTCACTTTCTCAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:149333986|149334217 hsa-miR-216a-5p 0 0 1
chr3:149333986|149334217 hsa-miR-216a-3p 0 0 1
chr3:149333986|149334217 hsa-miR-134-5p 0 0 1
chr3:149333986|149334217 hsa-miR-134-3p 0 0 1
chr3:149333986|149334217 hsa-miR-384 0 0 1
chr3:149333986|149334217 hsa-miR-539-5p 0 0 1
chr3:149333986|149334217 hsa-miR-539-3p 0 0 1
chr3:149333986|149334217 hsa-miR-570-5p 0 0 1
chr3:149333986|149334217 hsa-miR-570-3p 0 0 1
chr3:149333986|149334217 hsa-miR-216b-5p 0 0 1
chr3:149333986|149334217 hsa-miR-216b-3p 0 0 1
chr3:149333986|149334217 hsa-miR-1255a 0 0 1
chr3:149333986|149334217 hsa-miR-548m 0 0 1
chr3:149333986|149334217 hsa-miR-485-5p 0 1 1
chr3:149333986|149334217 hsa-miR-548c-3p 0 0 1
chr3:149333986|149334217 hsa-miR-1255b 0 0 1
chr3:149333986|149334217 hsa-miR-24 0 0 1
chr3:149333986|149334217 hsa-miR-886-3p 0 0 1
chr3:149333986|149334217 hsa-miR-762 1 1 0
chr3:149333986|149334217 hsa-miR-3141 1 0 0
chr3:149333986|149334217 hsa-miR-4259 1 0 0
chr3:149333986|149334217 hsa-miR-3621 1 0 0
chr3:149333986|149334217 hsa-miR-3911 1 0 0
chr3:149333986|149334217 hsa-miR-3929 0 1 0
chr3:149333986|149334217 hsa-miR-4478 0 1 0
chr3:149333986|149334217 hsa-miR-4498 1 1 0
chr3:149333986|149334217 hsa-miR-4505 1 0 0
chr3:149333986|149334217 hsa-miR-4508 1 0 0
chr3:149333986|149334217 hsa-miR-1587 1 0 0
chr3:149333986|149334217 hsa-miR-4656 1 0 0
chr3:149333986|149334217 hsa-miR-5787 1 1 0
chr3:149333986|149334217 hsa-miR-6086 1 0 0
chr3:149333986|149334217 hsa-miR-6745 1 1 0
chr3:149333986|149334217 hsa-miR-8072 1 0 0
chr3:149333986|149334217 hsa-miR-12114 1 0 0
chr3:149333986|149334217 hsa-miR-138-5p 1 1 0
chr3:149333986|149334217 hsa-miR-6734-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6765-5p 1 1 0
chr3:149333986|149334217 hsa-miR-6089 1 0 0
chr3:149333986|149334217 hsa-miR-3192-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6880-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6759-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6748-5p 1 1 0
chr3:149333986|149334217 hsa-miR-185-3p 1 0 0
chr3:149333986|149334217 hsa-miR-6786-5p 1 0 0
chr3:149333986|149334217 hsa-miR-3944-3p 1 0 0
chr3:149333986|149334217 hsa-miR-1229-5p 1 0 0
chr3:149333986|149334217 hsa-miR-3691-5p 1 1 0
chr3:149333986|149334217 hsa-miR-296-3p 1 1 0
chr3:149333986|149334217 hsa-miR-4446-3p 1 1 0
chr3:149333986|149334217 hsa-miR-423-5p 1 0 0
chr3:149333986|149334217 hsa-miR-1233-5p 1 0 0
chr3:149333986|149334217 hsa-miR-4763-3p 1 0 0
chr3:149333986|149334217 hsa-miR-6769b-5p 1 1 0
chr3:149333986|149334217 hsa-miR-6778-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6816-5p 1 0 0
chr3:149333986|149334217 hsa-miR-5001-5p 1 1 0
chr3:149333986|149334217 hsa-miR-6743-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6756-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6769a-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6803-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6813-5p 1 0 0
chr3:149333986|149334217 hsa-miR-3620-5p 1 0 0
chr3:149333986|149334217 hsa-miR-10392-5p 1 0 0
chr3:149333986|149334217 hsa-miR-10396b-5p 1 0 0
chr3:149333986|149334217 hsa-miR-1909-3p 1 0 0
chr3:149333986|149334217 hsa-miR-6846-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6848-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6883-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6831-5p 1 0 0
chr3:149333986|149334217 hsa-miR-3940-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6785-5p 1 0 0
chr3:149333986|149334217 hsa-miR-6884-5p 1 1 0
chr3:149333986|149334217 hsa-miR-363-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:149333986|149334217
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence LTSDDPPASASQSVEITGLSHCASPTFVFLIVGKICLYFCYDFSER
Nucleotide Sequence CTGACCTCAGATGATCCACCCGCCTCAGCCTCTCAAAGTGTTGAGATTACAGGCTTGAGCCATTGCGCCAGCCCTACCTTTGTTTTCTTAATAGTAGGAAAAATATGCCTTTATTTCTGTTATGATTTTTCAGAGAGGTAG
CircID chr3:149333986|149334217
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MVRSVQLSFQEFASIISTSLKNHNRNKGIFFLLLRKQR
Nucleotide Sequence TTGGTTAGATCAGTACAGCTTTCCTTCCAAGAGTTTGCATCTATTATCTCTACCTCTCTGAAAAATCATAACAGAAATAAAGGCATATTTTTCCTACTATTAAGAAAACAAAGGTAG
CircID chr3:149333986|149334217
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MVDEKNKISWLDQYSFPSKSLHLLSLPL
Nucleotide Sequence CTGGTGGATGAGAAAAACAAAATATCTTGGTTAGATCAGTACAGCTTTCCTTCCAAGAGTTTGCATCTATTATCTCTACCTCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab