CircRNA Information

General Information
circRNA Basic Information
CircID chr3:149336287|149336445
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGCCACTGAACCTTACTAGGAAAAATACCCAAGTCTCCTGTCCAGTCTCACTATCCATTCACGGTCACAGACTCAAGTGGTCCCTCAGCACCTGCCACATTTCTCTAGTCTGTTCATTCTCCCACTTTCCAAGCCAACTGTTTGAACTTCTCCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:149336287|149336445 hsa-miR-384 0 0 1
chr3:149336287|149336445 hsa-miR-539-5p 0 0 1
chr3:149336287|149336445 hsa-miR-539-3p 0 0 1
chr3:149336287|149336445 hsa-miR-627-5p 0 0 1
chr3:149336287|149336445 hsa-miR-627-3p 0 0 1
chr3:149336287|149336445 hsa-miR-921 0 1 1
chr3:149336287|149336445 hsa-miR-924 0 0 1
chr3:149336287|149336445 hsa-miR-1257 0 0 1
chr3:149336287|149336445 hsa-miR-1225-5p 0 0 1
chr3:149336287|149336445 hsa-miR-628-3p 0 1 1
chr3:149336287|149336445 hsa-miR-1207-5p 1 0 1
chr3:149336287|149336445 hsa-miR-765 1 0 0
chr3:149336287|149336445 hsa-miR-3132 1 0 0
chr3:149336287|149336445 hsa-miR-378b 1 0 0
chr3:149336287|149336445 hsa-miR-3138 1 0 0
chr3:149336287|149336445 hsa-miR-1193 1 0 0
chr3:149336287|149336445 hsa-miR-378c 1 0 0
chr3:149336287|149336445 hsa-miR-4298 1 0 0
chr3:149336287|149336445 hsa-miR-3665 1 1 0
chr3:149336287|149336445 hsa-miR-3911 1 0 0
chr3:149336287|149336445 hsa-miR-4434 0 1 0
chr3:149336287|149336445 hsa-miR-4436a 1 0 0
chr3:149336287|149336445 hsa-miR-4463 1 1 0
chr3:149336287|149336445 hsa-miR-3689c 1 0 0
chr3:149336287|149336445 hsa-miR-4494 1 0 0
chr3:149336287|149336445 hsa-miR-4515 1 0 0
chr3:149336287|149336445 hsa-miR-4538 1 0 0
chr3:149336287|149336445 hsa-miR-4648 1 0 0
chr3:149336287|149336445 hsa-miR-4654 1 0 0
chr3:149336287|149336445 hsa-miR-4689 1 0 0
chr3:149336287|149336445 hsa-miR-4739 1 0 0
chr3:149336287|149336445 hsa-miR-4748 1 0 0
chr3:149336287|149336445 hsa-miR-5192 1 0 0
chr3:149336287|149336445 hsa-miR-5703 0 1 0
chr3:149336287|149336445 hsa-miR-6085 1 0 0
chr3:149336287|149336445 hsa-miR-6860 1 0 0
chr3:149336287|149336445 hsa-miR-7150 0 1 0
chr3:149336287|149336445 hsa-miR-8081 0 1 0
chr3:149336287|149336445 hsa-miR-8085 1 0 0
chr3:149336287|149336445 hsa-miR-4731-5p 1 1 0
chr3:149336287|149336445 hsa-miR-6765-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6861-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6894-5p 1 1 0
chr3:149336287|149336445 hsa-miR-6089 1 0 0
chr3:149336287|149336445 hsa-miR-6757-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6746-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4653-3p 1 0 0
chr3:149336287|149336445 hsa-miR-7160-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4474-3p 1 0 0
chr3:149336287|149336445 hsa-miR-6721-5p 1 0 0
chr3:149336287|149336445 hsa-miR-197-5p 1 0 0
chr3:149336287|149336445 hsa-miR-7108-5p 1 0 0
chr3:149336287|149336445 hsa-miR-3605-5p 0 1 0
chr3:149336287|149336445 hsa-miR-6760-5p 1 0 0
chr3:149336287|149336445 hsa-miR-3150b-3p 1 1 0
chr3:149336287|149336445 hsa-miR-6888-5p 1 0 0
chr3:149336287|149336445 hsa-miR-1229-5p 1 0 0
chr3:149336287|149336445 hsa-miR-3691-5p 1 0 0
chr3:149336287|149336445 hsa-miR-92b-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6834-5p 0 1 0
chr3:149336287|149336445 hsa-miR-937-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4715-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6878-5p 1 0 0
chr3:149336287|149336445 hsa-miR-574-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4727-3p 1 1 0
chr3:149336287|149336445 hsa-miR-1304-5p 1 0 0
chr3:149336287|149336445 hsa-miR-503-3p 0 1 0
chr3:149336287|149336445 hsa-miR-1306-3p 1 0 0
chr3:149336287|149336445 hsa-miR-4796-3p 1 1 0
chr3:149336287|149336445 hsa-miR-1233-5p 1 0 0
chr3:149336287|149336445 hsa-miR-1273h-5p 1 0 0
chr3:149336287|149336445 hsa-miR-3689b-3p 1 0 0
chr3:149336287|149336445 hsa-miR-4763-3p 1 0 0
chr3:149336287|149336445 hsa-miR-6769b-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6778-5p 1 1 0
chr3:149336287|149336445 hsa-miR-6865-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6893-5p 1 0 0
chr3:149336287|149336445 hsa-miR-5001-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6743-5p 1 0 0
chr3:149336287|149336445 hsa-miR-1249-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6779-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6780a-5p 1 1 0
chr3:149336287|149336445 hsa-miR-6788-5p 1 1 0
chr3:149336287|149336445 hsa-miR-6879-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6780b-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6794-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4436b-3p 1 0 0
chr3:149336287|149336445 hsa-miR-3199 1 0 0
chr3:149336287|149336445 hsa-miR-1238-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4758-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4769-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6731-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4747-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6891-5p 1 0 0
chr3:149336287|149336445 hsa-miR-4716-3p 1 0 0
chr3:149336287|149336445 hsa-miR-6849-5p 1 0 0
chr3:149336287|149336445 hsa-miR-6884-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:149336287|149336445
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MSSLTIHSRSQTQVVPQHLPHFSSLFILPLSKPTV
Nucleotide Sequence CTGTCCAGTCTCACTATCCATTCACGGTCACAGACTCAAGTGGTCCCTCAGCACCTGCCACATTTCTCTAGTCTGTTCATTCTCCCACTTTCCAAGCCAACTGTTTGA
CircID chr3:149336287|149336445
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence LPLNLTRKNTQVSCPVSLSIHGHRLKWSLSTCHISLVCSFSHFPSQLFELLL
Nucleotide Sequence CTGCCACTGAACCTTACTAGGAAAAATACCCAAGTCTCCTGTCCAGTCTCACTATCCATTCACGGTCACAGACTCAAGTGGTCCCTCAGCACCTGCCACATTTCTCTAGTCTGTTCATTCTCCCACTTTCCAAGCCAACTGTTTGAACTTCTCCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab