CircRNA Information

General Information
circRNA Basic Information
CircID chr3:149846011|149902162
Strand +
CircType exon
Host Gene ENSG00000082996.19;
Algorism find_circ;CIRI2;DCC;
Sequence GTGATTTTACAACGAGATGCTGCTCTCCATAGGGATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATTTTAGCATATAACTTTGAAAATGCATCTCAGACATTTGATGACCTCCCTGCAAGATTTGGTTATAGACTTCCAGCTGAAGGTTTAAAGGGTTTTTTGATTAACTCAAAACCAGAGAATGCCTGTGAACCCATAGTGCCTCCACCAGTAAAAGACAATTCATCTGGCACTTTCATCGTGTTAATTAGAAGACTTGATTGTAATTTTGATATAAAGGTTTTAAATGCACAGAGAGCAGGATACAAGGCAGCCATAGTTCACAATGTTGATTCTGATGACCTCATTAGCATGGGATCCAACGACAGTAAGTACAGGAATTAAGTTATGTGTGGGAAGAAAACCTAAAATTTCTTCATCTTTCTTCTCTAATAAGTTATGTCTAGAGAGGAAGAAATCAAATGGAAATATTAAAAATAAAAATTACATCTCAATCTTATAGACTATTGAGAGAATTCAGTTGAGGTACTAAAGAAAATTGACATTCCATCTGTCTTTATTGGTGAATCATCAGCTAATTCTCTGAAAGATGAATTCACATATGAAAAAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:149846011|149902162 hsa-let-7b-5p 0 0 1
chr3:149846011|149902162 hsa-let-7b-3p 0 0 1
chr3:149846011|149902162 hsa-let-7c-5p 0 0 1
chr3:149846011|149902162 hsa-let-7c-3p 0 0 1
chr3:149846011|149902162 hsa-let-7d-5p 0 0 1
chr3:149846011|149902162 hsa-let-7d-3p 0 0 1
chr3:149846011|149902162 hsa-let-7e-5p 0 0 1
chr3:149846011|149902162 hsa-let-7e-3p 0 0 1
chr3:149846011|149902162 hsa-miR-23a-5p 0 0 1
chr3:149846011|149902162 hsa-miR-23a-3p 0 0 1
chr3:149846011|149902162 hsa-miR-33a-5p 0 0 1
chr3:149846011|149902162 hsa-miR-33a-3p 0 0 1
chr3:149846011|149902162 hsa-miR-98-5p 0 0 1
chr3:149846011|149902162 hsa-miR-98-3p 0 0 1
chr3:149846011|149902162 hsa-miR-198 0 0 1
chr3:149846011|149902162 hsa-let-7g-5p 0 0 1
chr3:149846011|149902162 hsa-let-7g-3p 0 0 1
chr3:149846011|149902162 hsa-let-7i-5p 0 0 1
chr3:149846011|149902162 hsa-let-7i-3p 0 0 1
chr3:149846011|149902162 hsa-miR-23b-5p 0 0 1
chr3:149846011|149902162 hsa-miR-23b-3p 0 0 1
chr3:149846011|149902162 hsa-miR-136-5p 0 0 1
chr3:149846011|149902162 hsa-miR-136-3p 0 0 1
chr3:149846011|149902162 hsa-miR-186-5p 0 0 1
chr3:149846011|149902162 hsa-miR-186-3p 0 0 1
chr3:149846011|149902162 hsa-miR-489-5p 0 0 1
chr3:149846011|149902162 hsa-miR-489-3p 0 0 1
chr3:149846011|149902162 hsa-miR-511-5p 0 0 1
chr3:149846011|149902162 hsa-miR-511-3p 0 0 1
chr3:149846011|149902162 hsa-miR-202-5p 0 0 1
chr3:149846011|149902162 hsa-miR-202-3p 0 0 1
chr3:149846011|149902162 hsa-miR-626 0 0 1
chr3:149846011|149902162 hsa-miR-33b-5p 0 0 1
chr3:149846011|149902162 hsa-miR-33b-3p 0 0 1
chr3:149846011|149902162 hsa-miR-943 0 0 1
chr3:149846011|149902162 hsa-miR-1179 0 0 1
chr3:149846011|149902162 hsa-let-7a 0 0 1
chr3:149846011|149902162 hsa-let-7f 0 0 1
chr3:149846011|149902162 hsa-miR-125b-2-3p 0 1 0
chr3:149846011|149902162 hsa-miR-3157-5p 0 1 0
chr3:149846011|149902162 hsa-miR-4708-5p 0 1 0
chr3:149846011|149902162 hsa-miR-3691-3p 0 1 0
chr3:149846011|149902162 hsa-miR-519d-5p 0 1 0
chr3:149846011|149902162 hsa-miR-6847-3p 0 1 0
chr3:149846011|149902162 hsa-miR-4731-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:149846011|149902162
ORF Type ORF1
Protein Length 142
Nucleotide Length 426
Protein Sequence MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDSKYRN*
Nucleotide Sequence ATGCTGCTCTCCATAGGGATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATTTTAGCATATAACTTTGAAAATGCATCTCAGACATTTGATGACCTCCCTGCAAGATTTGGTTATAGACTTCCAGCTGAAGGTTTAAAGGGTTTTTTGATTAACTCAAAACCAGAGAATGCCTGTGAACCCATAGTGCCTCCACCAGTAAAAGACAATTCATCTGGCACTTTCATCGTGTTAATTAGAAGACTTGATTGTAATTTTGATATAAAGGTTTTAAATGCACAGAGAGCAGGATACAAGGCAGCCATAGTTCACAATGTTGATTCTGATGACCTCATTAGCATGGGATCCAACGACAGTAAGTACAGGAATTAA
CircID chr3:149846011|149902162
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MAALYPALCAFKTFISKLQSSLLINTMKVPDELSFTGGGTMGSQAFSGFELIKKPFKPSAGSL*
Nucleotide Sequence ATGGCTGCCTTGTATCCTGCTCTCTGTGCATTTAAAACCTTTATATCAAAATTACAATCAAGTCTTCTAATTAACACGATGAAAGTGCCAGATGAATTGTCTTTTACTGGTGGAGGCACTATGGGTTCACAGGCATTCTCTGGTTTTGAGTTAATCAAAAAACCCTTTAAACCTTCAGCTGGAAGTCTATAA
CircID chr3:149846011|149902162
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MLILMTSLAWDPTTVSTGIKLCVGRKPKISSSFFSNKLCLERKKSNGNIKNKNYISIL*
Nucleotide Sequence ATGTTGATTCTGATGACCTCATTAGCATGGGATCCAACGACAGTAAGTACAGGAATTAAGTTATGTGTGGGAAGAAAACCTAAAATTTCTTCATCTTTCTTCTCTAATAAGTTATGTCTAGAGAGGAAGAAATCAAATGGAAATATTAAAAATAAAAATTACATCTCAATCTTATAG
CircID chr3:149846011|149902162
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MSEMHFQSYMLKCLLLQAVGLRMQRAGQSRWCRLVWLTA*
Nucleotide Sequence ATGTCTGAGATGCATTTTCAAAGTTATATGCTAAAATGTCTGCTTCTACAGGCAGTAGGTTTAAGAATGCAAAGAGCTGGACAGTCAAGATGGTGTAGACTTGTGTGGCTGACAGCATGA
CircID chr3:149846011|149902162
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MSIFFSTSMLKCLLLQAVGLRMQRAGQSRWCRLVWLTA
Nucleotide Sequence ATGTCAATTTTCTTTAGTACCTCAATGCTAAAATGTCTGCTTCTACAGGCAGTAGGTTTAAGAATGCAAAGAGCTGGACAGTCAAGATGGTGTAGACTTGTGTGGCTGACAGCATGA
CircID chr3:149846011|149902162
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILALRY
Nucleotide Sequence ATGCTGCTCTCCATAGGGATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATTTTAGCATTGAGGTACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:149846011|149902162 NOP56 0 2 0
chr3:149846011|149902162 MOV10 0 0 2
chr3:149846011|149902162 FUS 0 0 3
chr3:149846011|149902162 SF3B4 1 0 0
chr3:149846011|149902162 PRPF8 0 0 1
chr3:149846011|149902162 TAF15 2 0 0
chr3:149846011|149902162 NUDT21 0 1 0
chr3:149846011|149902162 CPSF4 0 1 0
chr3:149846011|149902162 ELAVL1 0 3 3
chr3:149846011|149902162 NOP58 0 0 3
chr3:149846011|149902162 U2AF2 5 6 3
chr3:149846011|149902162 DDX54 0 0 9
chr3:149846011|149902162 RBM10 1 0 0
chr3:149846011|149902162 HNRNPM 0 1 0
chr3:149846011|149902162 SF3A3 1 0 0
chr3:149846011|149902162 PTBP1 2 2 1
chr3:149846011|149902162 HNRNPC 4 1 4
chr3:149846011|149902162 DDX3X 1 0 0
chr3:149846011|149902162 ZC3H7B 0 0 1
chr3:149846011|149902162 SMNDC1 1 0 0
chr3:149846011|149902162 RANGAP1 1 0 0
chr3:149846011|149902162 IGF2BP3 1 0 1
chr3:149846011|149902162 IGF2BP2 1 0 8
chr3:149846011|149902162 TARDBP 1 2 0
chr3:149846011|149902162 RBM47 1 0 3
chr3:149846011|149902162 CSTF2T 0 0 2
chr3:149846011|149902162 CSTF2 2 0 0
chr3:149846011|149902162 SUPV3L1 0 1 0
chr3:149846011|149902162 AGO2 0 0 6
chr3:149846011|149902162 ATXN2 1 0 0
chr3:149846011|149902162 EIF4A3 5 3 7
chr3:149846011|149902162 FBL 2 1 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab