CircRNA Information

General Information
circRNA Basic Information
CircID chr3:150562542|150563614
Strand +
CircType exon
Host Gene ENSG00000144895.11;
Algorism find_circ;CIRI2;DCC;
Sequence AGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:150562542|150563614 hsa-miR-217-5p 0 0 1
chr3:150562542|150563614 hsa-miR-217-3p 0 0 1
chr3:150562542|150563614 hsa-miR-200b-5p 0 0 1
chr3:150562542|150563614 hsa-miR-200b-3p 0 0 1
chr3:150562542|150563614 hsa-miR-200c-5p 0 0 1
chr3:150562542|150563614 hsa-miR-200c-3p 0 0 1
chr3:150562542|150563614 hsa-miR-429 0 1 1
chr3:150562542|150563614 hsa-miR-597-5p 0 0 1
chr3:150562542|150563614 hsa-miR-597-3p 0 0 1
chr3:150562542|150563614 hsa-miR-656-5p 0 0 1
chr3:150562542|150563614 hsa-miR-656-3p 0 0 1
chr3:150562542|150563614 hsa-miR-668-5p 0 0 1
chr3:150562542|150563614 hsa-miR-668-3p 0 0 1
chr3:150562542|150563614 hsa-miR-1229-5p 0 0 1
chr3:150562542|150563614 hsa-miR-1229-3p 0 0 1
chr3:150562542|150563614 hsa-miR-885-3p 0 0 1
chr3:150562542|150563614 hsa-miR-361-5p 0 0 1
chr3:150562542|150563614 hsa-miR-483-3p 0 1 1
chr3:150562542|150563614 hsa-miR-509-3-5p 0 0 1
chr3:150562542|150563614 hsa-miR-509-5p 0 0 1
chr3:150562542|150563614 hsa-miR-4452 0 1 0
chr3:150562542|150563614 hsa-miR-4475 0 1 0
chr3:150562542|150563614 hsa-miR-7703 0 1 0
chr3:150562542|150563614 hsa-miR-8073 1 1 0
chr3:150562542|150563614 hsa-miR-3191-3p 1 0 0
chr3:150562542|150563614 hsa-miR-660-3p 0 1 0
chr3:150562542|150563614 hsa-miR-25-3p 0 1 0
chr3:150562542|150563614 hsa-miR-6784-3p 0 1 0
chr3:150562542|150563614 hsa-miR-6862-3p 1 1 0
chr3:150562542|150563614 hsa-miR-6807-3p 1 1 0
chr3:150562542|150563614 hsa-miR-92b-3p 1 1 0
chr3:150562542|150563614 hsa-miR-888-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:150562542|150563614
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MPGQYFWVRIQGKLPSGGRRSAVVPC
Nucleotide Sequence TTGCCAGGACAGTATTTTTGGGTGAGAATTCAAGGCAAACTGCCTTCAGGAGGTCGAAGGAGTGCAGTAGTCCCTTGTTAG
CircID chr3:150562542|150563614
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MGENSRQTAFRRSKECSSPLLVTLIIFT
Nucleotide Sequence TTGGGTGAGAATTCAAGGCAAACTGCCTTCAGGAGGTCGAAGGAGTGCAGTAGTCCCTTGTTAGTGACACTGATAATATTTACT
CircID chr3:150562542|150563614
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MHSFDLLKAVCLEFSPKNTVLATWQPYTKI
Nucleotide Sequence CTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTAAAATT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:150562542|150563614 U2AF2 10 15 2
chr3:150562542|150563614 MOV10 0 9 0
chr3:150562542|150563614 ELAVL1 1 6 2
chr3:150562542|150563614 FAM120A 0 2 4
chr3:150562542|150563614 PUM2 0 1 0
chr3:150562542|150563614 PRPF8 0 7 0
chr3:150562542|150563614 UPF1 0 3 0
chr3:150562542|150563614 TAF15 1 0 1
chr3:150562542|150563614 FMR1 0 0 3
chr3:150562542|150563614 FUS 0 2 0
chr3:150562542|150563614 SRSF7 0 1 1
chr3:150562542|150563614 SRSF1 0 4 2
chr3:150562542|150563614 NOP58 2 5 1
chr3:150562542|150563614 U2AF1 0 3 2
chr3:150562542|150563614 ADAR 2 1 0
chr3:150562542|150563614 NOP56 0 1 1
chr3:150562542|150563614 DDX54 1 1 9
chr3:150562542|150563614 RBM10 0 3 0
chr3:150562542|150563614 SF3A3 0 1 0
chr3:150562542|150563614 PTBP1 0 1 0
chr3:150562542|150563614 HNRNPC 1 3 0
chr3:150562542|150563614 YWHAG 0 0 1
chr3:150562542|150563614 ZNF184 0 1 0
chr3:150562542|150563614 DDX3X 0 0 1
chr3:150562542|150563614 ZC3H7B 0 0 1
chr3:150562542|150563614 SMNDC1 0 1 0
chr3:150562542|150563614 MSI2 0 1 0
chr3:150562542|150563614 ACIN1 0 4 1
chr3:150562542|150563614 LIN28B 0 1 4
chr3:150562542|150563614 QKI 0 1 0
chr3:150562542|150563614 FXR1 0 0 1
chr3:150562542|150563614 FXR2 0 0 4
chr3:150562542|150563614 SND1 0 2 1
chr3:150562542|150563614 IGF2BP1 0 7 7
chr3:150562542|150563614 IGF2BP3 0 4 7
chr3:150562542|150563614 IGF2BP2 6 8 10
chr3:150562542|150563614 NPM1 0 0 1
chr3:150562542|150563614 TARDBP 0 1 0
chr3:150562542|150563614 BUD13 0 2 1
chr3:150562542|150563614 RBFOX2 2 0 0
chr3:150562542|150563614 RBM47 0 1 1
chr3:150562542|150563614 EIF4G2 1 0 0
chr3:150562542|150563614 DDX42 1 0 1
chr3:150562542|150563614 CSTF2T 0 0 2
chr3:150562542|150563614 TIA1 0 3 0
chr3:150562542|150563614 RBM27 0 1 1
chr3:150562542|150563614 RBM22 0 2 0
chr3:150562542|150563614 ILF3 1 0 0
chr3:150562542|150563614 TIAL1 0 2 0
chr3:150562542|150563614 FBL 0 2 2
chr3:150562542|150563614 AGO1 0 2 0
chr3:150562542|150563614 EWSR1 0 1 0
chr3:150562542|150563614 EIF4A3 0 1 2
chr3:150562542|150563614 AGO2 0 5 13
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab