CircRNA Information

General Information
circRNA Basic Information
CircID chr3:169982855|169983253
Strand +
CircType exon
Host Gene ENSG00000008952.15;
Algorism CIRI2;
Sequence CTCATTTCCATCCAGAAAAACCTGATCATCATGTGGCTCAAGTTTGAATTTTTTCTTAGTTTCCTTCTTTTTAGGAGTTCCTGGAGTTTCCTCCTATGAAAACACAAGTTGGACAGAAGAAATAACACAAGTAAGCAAGAAATATGATGTTCATACAGTCAAAAAACTTTCACTGACTATTTGTAACACAGAAATAAAAATTCTCAACCACGGTATTTATAACAACTCTAATATAGTTATCTCAGGTAGGTGTTGCATAATACTTAAATGTGCTCATAGGCCAGTAGTGTTCATGTGCACATAATGATTTTTAAATTTTTACTTAATTTTAGATTAACTCACCTTTTTGGATTCTTCCTTTTCACCATCTTTTTTTTTCTCTTTTTCTTTTTTTGTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:169982855|169983253 hsa-miR-383-5p 0 0 1
chr3:169982855|169983253 hsa-miR-383-3p 0 0 1
chr3:169982855|169983253 hsa-miR-340-5p 0 0 1
chr3:169982855|169983253 hsa-miR-340-3p 0 0 1
chr3:169982855|169983253 hsa-miR-376b-5p 0 0 1
chr3:169982855|169983253 hsa-miR-376b-3p 0 0 1
chr3:169982855|169983253 hsa-miR-193b-5p 0 0 1
chr3:169982855|169983253 hsa-miR-193b-3p 0 0 1
chr3:169982855|169983253 hsa-miR-561-5p 0 0 1
chr3:169982855|169983253 hsa-miR-561-3p 0 0 1
chr3:169982855|169983253 hsa-miR-563 0 0 1
chr3:169982855|169983253 hsa-miR-578 0 0 1
chr3:169982855|169983253 hsa-miR-580-5p 0 0 1
chr3:169982855|169983253 hsa-miR-580-3p 0 0 1
chr3:169982855|169983253 hsa-miR-581 0 0 1
chr3:169982855|169983253 hsa-miR-656-5p 0 0 1
chr3:169982855|169983253 hsa-miR-656-3p 0 0 1
chr3:169982855|169983253 hsa-miR-892b 0 0 1
chr3:169982855|169983253 hsa-miR-665 0 0 1
chr3:169982855|169983253 hsa-miR-873-5p 0 0 1
chr3:169982855|169983253 hsa-miR-873-3p 0 0 1
chr3:169982855|169983253 hsa-miR-943 0 0 1
chr3:169982855|169983253 hsa-miR-1299 0 0 1
chr3:169982855|169983253 hsa-miR-1272 0 0 1
chr3:169982855|169983253 hsa-miR-1279 0 0 1
chr3:169982855|169983253 hsa-miR-1252-5p 0 0 1
chr3:169982855|169983253 hsa-miR-1252-3p 0 0 1
chr3:169982855|169983253 hsa-miR-129-5p 0 0 1
chr3:169982855|169983253 hsa-miR-508-5p 0 0 1
chr3:169982855|169983253 hsa-miR-455-5p 0 0 1
chr3:169982855|169983253 hsa-miR-556-5p 0 0 1
chr3:169982855|169983253 hsa-miR-524-5p 0 0 1
chr3:169982855|169983253 hsa-miR-193a-3p 0 0 1
chr3:169982855|169983253 hsa-miR-491-3p 0 0 1
chr3:169982855|169983253 hsa-miR-548c-3p 0 0 1
chr3:169982855|169983253 hsa-miR-520d-5p 0 0 1
chr3:169982855|169983253 hsa-miR-1300 0 0 1
chr3:169982855|169983253 hsa-miR-516b 0 0 1
chr3:169982855|169983253 hsa-miR-376a 0 0 1
chr3:169982855|169983253 hsa-miR-6078 1 0 0
chr3:169982855|169983253 hsa-miR-6124 1 0 0
chr3:169982855|169983253 hsa-miR-7851-3p 1 0 0
chr3:169982855|169983253 hsa-miR-137-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr3:169982855|169983253
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MIIMWLKFEFFLSFLLFRSSWSFLL
Nucleotide Sequence CTGATCATCATGTGGCTCAAGTTTGAATTTTTTCTTAGTTTCCTTCTTTTTAGGAGTTCCTGGAGTTTCCTCCTATGA

CircID chr3:169982855|169983253
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MIFKFLLNFRLTHLFGFFLFTIFFFLFFFFCL
Nucleotide Sequence ATGATTTTTAAATTTTTACTTAATTTTAGATTAACTCACCTTTTTGGATTCTTCCTTTTCACCATCTTTTTTTTTCTCTTTTTCTTTTTTTGTCTT

CircID chr3:169982855|169983253
ORF Type ORF3
Protein Length 86
Nucleotide Length 261
Protein Sequence MNFFLVSFFLGVPGVSSYENTSWTEEITQVSKKYDVHTVKKLSLTICNTEIKILNHGIYNNSNIVISGRCCIILKCAHRPVVFMCT
Nucleotide Sequence TTGAATTTTTTCTTAGTTTCCTTCTTTTTAGGAGTTCCTGGAGTTTCCTCCTATGAAAACACAAGTTGGACAGAAGAAATAACACAAGTAAGCAAGAAATATGATGTTCATACAGTCAAAAAACTTTCACTGACTATTTGTAACACAGAAATAAAAATTCTCAACCACGGTATTTATAACAACTCTAATATAGTTATCTCAGGTAGGTGTTGCATAATACTTAAATGTGCTCATAGGCCAGTAGTGTTCATGTGCACATAA

CircID chr3:169982855|169983253
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MYEHHISCLLVLFLLSNLCFHRRKLQELLKRRKLRKNSNLSHMMIRFFWMEM
Nucleotide Sequence CTGTATGAACATCATATTTCTTGCTTACTTGTGTTATTTCTTCTGTCCAACTTGTGTTTTCATAGGAGGAAACTCCAGGAACTCCTAAAAAGAAGGAAACTAAGAAAAAATTCAAACTTGAGCCACATGATGATCAGGTTTTTCTGGATGGAAATG

CircID chr3:169982855|169983253
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MNIIFLAYLCYFFCPTCVFIGGNSRNS
Nucleotide Sequence ATGAACATCATATTTCTTGCTTACTTGTGTTATTTCTTCTGTCCAACTTGTGTTTTCATAGGAGGAAACTCCAGGAACTCCTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites