CircRNA Information

General Information
circRNA Basic Information
CircID chr3:173604279|173605593
Strand +
CircType exon
Host Gene ENSG00000169760.17;
Algorism find_circ;CIRI2;DCC;
Sequence GATATAGACCTGCAGCTAACTGGATTTGATTTATAAGAGAGAAATCTGCAGTCAATGCCCACTCTTGCCACACTGCTAATATGGAAAACAGAATGTTCAATAGGATATGGTCTGATAAATAGTGATGATTGAAGATGCTGCTCCAATACATGTGAAATCAATGGGAGATATCTGCTGTCTGAAGATCTTTCAGAGCTTTTCTCGACAAGCTCCCCTGTAAGAAATCGGAGAATATCATTGATGGCAGATTGCCAGAAGTCATGCTTCCTGTGTGGTTTACTAATAACTTGGATGTGGTTTCATCATATGTGCAAGACCAGAGCGAAGACTGCCTATATTTAAATATATATGTCCCGACTGAGGATGTCTTCTATTCATTTTTCAGTAAAAAGAATATCCAAGGAATGTGCCAGAAAGCCCGGCAAGAAAATATGTAGAAAAGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:173604279|173605593 hsa-miR-146a-3p 0 1 1
chr3:173604279|173605593 hsa-miR-31-5p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:173604279|173605593 FBL 0 2 0
chr3:173604279|173605593 ELAVL1 0 1 0
chr3:173604279|173605593 MSI1 0 1 0
chr3:173604279|173605593 LIN28B 0 1 0
chr3:173604279|173605593 EWSR1 0 1 0
chr3:173604279|173605593 UPF1 0 1 0
chr3:173604279|173605593 TAF15 4 0 0
chr3:173604279|173605593 NOP58 0 1 1
chr3:173604279|173605593 IGF2BP2 0 3 4
chr3:173604279|173605593 AGO2 1 1 0
chr3:173604279|173605593 FUS 0 1 0