CircRNA Information

General Information
circRNA Basic Information
CircID chr3:181700539|181709833
Strand -
CircType exon
Host Gene ENSG00000242808.6;
Algorism CIRI2;
Sequence CTGAGAAGCTCTTGAGTGAAATTATTTGGTGAAATTGGGTCTGGACTGAAACAGCAATTGTTATCCCTTGTTCATTTGTTAAGTGTAATACCACTTCTGGAAATTAAAGGCAAGGTGCTTCTTTTAAAGGTAAAAGCAATAGTCTTGGAAAAGCGAATCTACCAGCAGGGGGCGCACCAGCCACATCCCTGAAACCAGCCGCGCTGAAAAGCCGGTGGCCGCCTTCTCTTCCCCAGATCTTCTCAACCTTTTCTCTTTCCTAATCTCCAGGTCCGTGTTTACCTTAATATTACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:181700539|181709833 hsa-miR-30a-5p 0 0 1
chr3:181700539|181709833 hsa-miR-30a-3p 0 0 1
chr3:181700539|181709833 hsa-miR-197-5p 0 0 1
chr3:181700539|181709833 hsa-miR-197-3p 0 0 1
chr3:181700539|181709833 hsa-miR-198 0 0 1
chr3:181700539|181709833 hsa-miR-30d-5p 0 0 1
chr3:181700539|181709833 hsa-miR-30d-3p 0 0 1
chr3:181700539|181709833 hsa-miR-30b-5p 0 0 1
chr3:181700539|181709833 hsa-miR-30b-3p 0 0 1
chr3:181700539|181709833 hsa-miR-137-5p 0 0 1
chr3:181700539|181709833 hsa-miR-137-3p 0 0 1
chr3:181700539|181709833 hsa-miR-30e-5p 0 0 1
chr3:181700539|181709833 hsa-miR-30e-3p 0 0 1
chr3:181700539|181709833 hsa-miR-370-5p 0 0 1
chr3:181700539|181709833 hsa-miR-370-3p 0 0 1
chr3:181700539|181709833 hsa-miR-379-5p 0 0 1
chr3:181700539|181709833 hsa-miR-379-3p 0 0 1
chr3:181700539|181709833 hsa-miR-335-5p 0 0 1
chr3:181700539|181709833 hsa-miR-335-3p 0 0 1
chr3:181700539|181709833 hsa-miR-492 0 0 1
chr3:181700539|181709833 hsa-miR-495-5p 0 0 1
chr3:181700539|181709833 hsa-miR-495-3p 0 0 1
chr3:181700539|181709833 hsa-miR-580-5p 0 0 1
chr3:181700539|181709833 hsa-miR-580-3p 0 0 1
chr3:181700539|181709833 hsa-miR-619-5p 0 0 1
chr3:181700539|181709833 hsa-miR-619-3p 0 0 1
chr3:181700539|181709833 hsa-miR-620 0 0 1
chr3:181700539|181709833 hsa-miR-631 0 0 1
chr3:181700539|181709833 hsa-miR-637 0 0 1
chr3:181700539|181709833 hsa-miR-675-5p 0 0 1
chr3:181700539|181709833 hsa-miR-675-3p 0 0 1
chr3:181700539|181709833 hsa-miR-1253 0 0 1
chr3:181700539|181709833 hsa-miR-1270 0 0 1
chr3:181700539|181709833 hsa-miR-302f 0 0 1
chr3:181700539|181709833 hsa-miR-525-5p 0 0 1
chr3:181700539|181709833 hsa-miR-520a-5p 0 0 1
chr3:181700539|181709833 hsa-miR-455-3p 0 0 1
chr3:181700539|181709833 hsa-miR-30c 0 0 1
chr3:181700539|181709833 hsa-miR-138 0 0 1
chr3:181700539|181709833 hsa-miR-1300 0 0 1
chr3:181700539|181709833 hsa-miR-923 0 0 1
chr3:181700539|181709833 hsa-miR-762 1 0 0
chr3:181700539|181709833 hsa-miR-765 1 0 0
chr3:181700539|181709833 hsa-miR-1469 1 0 0
chr3:181700539|181709833 hsa-miR-2110 1 0 0
chr3:181700539|181709833 hsa-miR-2861 1 0 0
chr3:181700539|181709833 hsa-miR-3132 1 0 0
chr3:181700539|181709833 hsa-miR-4298 1 0 0
chr3:181700539|181709833 hsa-miR-4271 1 0 0
chr3:181700539|181709833 hsa-miR-3652 1 0 0
chr3:181700539|181709833 hsa-miR-3661 1 0 0
chr3:181700539|181709833 hsa-miR-4450 1 0 0
chr3:181700539|181709833 hsa-miR-4462 1 0 0
chr3:181700539|181709833 hsa-miR-4476 1 0 0
chr3:181700539|181709833 hsa-miR-4496 1 0 0
chr3:181700539|181709833 hsa-miR-4533 1 0 0
chr3:181700539|181709833 hsa-miR-4535 1 0 0
chr3:181700539|181709833 hsa-miR-4644 1 0 0
chr3:181700539|181709833 hsa-miR-4689 1 0 0
chr3:181700539|181709833 hsa-miR-4739 1 0 0
chr3:181700539|181709833 hsa-miR-4784 1 0 0
chr3:181700539|181709833 hsa-miR-5192 1 0 0
chr3:181700539|181709833 hsa-miR-5739 1 0 0
chr3:181700539|181709833 hsa-miR-6086 1 0 0
chr3:181700539|181709833 hsa-miR-6124 1 0 0
chr3:181700539|181709833 hsa-miR-8089 1 0 0
chr3:181700539|181709833 hsa-miR-9500 1 0 0
chr3:181700539|181709833 hsa-miR-92a-1-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6857-5p 1 0 0
chr3:181700539|181709833 hsa-miR-7851-3p 1 0 0
chr3:181700539|181709833 hsa-miR-5187-5p 1 0 0
chr3:181700539|181709833 hsa-miR-7847-3p 1 0 0
chr3:181700539|181709833 hsa-miR-6730-5p 1 0 0
chr3:181700539|181709833 hsa-miR-8069 1 0 0
chr3:181700539|181709833 hsa-miR-6798-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6810-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6740-5p 1 0 0
chr3:181700539|181709833 hsa-miR-185-5p 1 0 0
chr3:181700539|181709833 hsa-miR-296-3p 1 0 0
chr3:181700539|181709833 hsa-miR-6823-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6749-5p 1 0 0
chr3:181700539|181709833 hsa-miR-2277-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6737-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6819-5p 1 0 0
chr3:181700539|181709833 hsa-miR-7107-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6763-5p 1 0 0
chr3:181700539|181709833 hsa-miR-7111-5p 1 0 0
chr3:181700539|181709833 hsa-miR-4725-3p 1 0 0
chr3:181700539|181709833 hsa-miR-6858-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6831-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6739-5p 1 0 0
chr3:181700539|181709833 hsa-miR-4700-5p 1 0 0
chr3:181700539|181709833 hsa-miR-3679-5p 1 0 0
chr3:181700539|181709833 hsa-miR-4646-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6876-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6750-5p 1 0 0
chr3:181700539|181709833 hsa-miR-4667-5p 1 0 0
chr3:181700539|181709833 hsa-miR-6791-5p 1 0 0
chr3:181700539|181709833 hsa-miR-3928-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:181700539|181709833
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MKQQLLSLVHLLSVIPLLEIKGKVLLLKVKAIVLEKRIYQQGAHQPHP
Nucleotide Sequence CTGAAACAGCAATTGTTATCCCTTGTTCATTTGTTAAGTGTAATACCACTTCTGGAAATTAAAGGCAAGGTGCTTCTTTTAAAGGTAAAAGCAATAGTCTTGGAAAAGCGAATCTACCAGCAGGGGGCGCACCAGCCACATCCCTGA
CircID chr3:181700539|181709833
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MEIRKEKRLRRSGEEKAATGFSARLVSGMWLVRPLLVDSLFQDYCFYL
Nucleotide Sequence CTGGAGATTAGGAAAGAGAAAAGGTTGAGAAGATCTGGGGAAGAGAAGGCGGCCACCGGCTTTTCAGCGCGGCTGGTTTCAGGGATGTGGCTGGTGCGCCCCCTGCTGGTAGATTCGCTTTTCCAAGACTATTGCTTTTACCTTTAA
CircID chr3:181700539|181709833
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MGKRRRPPAFQRGWFQGCGWCAPCW
Nucleotide Sequence CTGGGGAAGAGAAGGCGGCCACCGGCTTTTCAGCGCGGCTGGTTTCAGGGATGTGGCTGGTGCGCCCCCTGCTGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab