CircRNA Information

General Information
circRNA Basic Information
CircID chr3:18378170|18378325
Strand -
CircType exon
Host Gene ENSG00000182568.16;
Algorism find_circ;CIRI2;CIRC
Sequence GTGAAAACAGCTACTATTGCCACTGAAAGGAATGGGAAACCAGAGAACAATACCATGAACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:18378170|18378325 hsa-miR-17-5p 0 0 1
chr3:18378170|18378325 hsa-miR-17-3p 0 0 1
chr3:18378170|18378325 hsa-miR-20a-5p 0 0 1
chr3:18378170|18378325 hsa-miR-20a-3p 0 0 1
chr3:18378170|18378325 hsa-miR-93-5p 0 0 1
chr3:18378170|18378325 hsa-miR-93-3p 0 0 1
chr3:18378170|18378325 hsa-miR-106a-5p 0 0 1
chr3:18378170|18378325 hsa-miR-106a-3p 0 0 1
chr3:18378170|18378325 hsa-miR-107 0 0 1
chr3:18378170|18378325 hsa-miR-214-5p 0 0 1
chr3:18378170|18378325 hsa-miR-214-3p 0 0 1
chr3:18378170|18378325 hsa-miR-155-5p 0 0 1
chr3:18378170|18378325 hsa-miR-155-3p 0 0 1
chr3:18378170|18378325 hsa-miR-106b-5p 0 0 1
chr3:18378170|18378325 hsa-miR-106b-3p 0 0 1
chr3:18378170|18378325 hsa-miR-20b-5p 0 0 1
chr3:18378170|18378325 hsa-miR-20b-3p 0 0 1
chr3:18378170|18378325 hsa-miR-452-5p 0 0 1
chr3:18378170|18378325 hsa-miR-452-3p 0 0 1
chr3:18378170|18378325 hsa-miR-488-5p 0 0 1
chr3:18378170|18378325 hsa-miR-488-3p 0 0 1
chr3:18378170|18378325 hsa-miR-519d-5p 0 0 1
chr3:18378170|18378325 hsa-miR-519d-3p 0 0 1
chr3:18378170|18378325 hsa-miR-527 0 0 1
chr3:18378170|18378325 hsa-miR-570-5p 0 0 1
chr3:18378170|18378325 hsa-miR-570-3p 0 0 1
chr3:18378170|18378325 hsa-miR-1301-5p 0 0 1
chr3:18378170|18378325 hsa-miR-1301-3p 0 0 1
chr3:18378170|18378325 hsa-miR-922 0 0 1
chr3:18378170|18378325 hsa-miR-1208 0 0 1
chr3:18378170|18378325 hsa-miR-1272 0 1 1
chr3:18378170|18378325 hsa-miR-513c-5p 0 0 1
chr3:18378170|18378325 hsa-miR-513c-3p 0 0 1
chr3:18378170|18378325 hsa-miR-1322 0 0 1
chr3:18378170|18378325 hsa-miR-518a-5p 0 0 1
chr3:18378170|18378325 hsa-miR-516a-3p 0 0 1
chr3:18378170|18378325 hsa-miR-450b-5p 0 0 1
chr3:18378170|18378325 hsa-miR-103 0 0 1
chr3:18378170|18378325 hsa-miR-761 0 1 0
chr3:18378170|18378325 hsa-miR-4291 0 1 0
chr3:18378170|18378325 hsa-miR-4425 1 0 0
chr3:18378170|18378325 hsa-miR-4530 1 0 0
chr3:18378170|18378325 hsa-miR-4533 1 0 0
chr3:18378170|18378325 hsa-miR-5093 0 1 0
chr3:18378170|18378325 hsa-miR-5690 0 1 0
chr3:18378170|18378325 hsa-miR-6165 1 1 0
chr3:18378170|18378325 hsa-miR-12124 0 1 0
chr3:18378170|18378325 hsa-miR-4433b-3p 1 0 0
chr3:18378170|18378325 hsa-miR-4433a-3p 1 0 0
chr3:18378170|18378325 hsa-miR-6728-5p 1 0 0
chr3:18378170|18378325 hsa-miR-6757-5p 1 1 0
chr3:18378170|18378325 hsa-miR-6873-5p 1 0 0
chr3:18378170|18378325 hsa-miR-3622b-5p 1 0 0
chr3:18378170|18378325 hsa-miR-6716-5p 1 0 0
chr3:18378170|18378325 hsa-miR-6828-5p 1 0 0
chr3:18378170|18378325 hsa-miR-3678-3p 0 1 0
chr3:18378170|18378325 hsa-miR-2115-5p 0 1 0
chr3:18378170|18378325 hsa-miR-4727-3p 1 0 0
chr3:18378170|18378325 hsa-miR-4758-5p 1 0 0
chr3:18378170|18378325 hsa-miR-6731-5p 1 0 0
chr3:18378170|18378325 hsa-miR-520f-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:18378170|18378325
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence LAFGCCNLCKQCLRHFSTLHFLLNLIINGSINVHGIVLWFPIPFSGNSSCFH
Nucleotide Sequence CTGGCTTTTGGTTGCTGCAACCTTTGCAAACAGTGCTTGAGACACTTTAGCACGCTTCATTTCCTGCTGAATCTCATCATAAATGGAAGCATTAATGTTCATGGTATTGTTCTCTGGTTTCCCATTCCTTTCAGTGGCAATAGTAGCTGTTTTCAC
CircID chr3:18378170|18378325
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MNINASIYDEIQQEMKRAKVSQALFAKVAATKSQ
Nucleotide Sequence ATGAACATTAATGCTTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCTCAAGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:18378170|18378325 ELAVL1 6 9 0
chr3:18378170|18378325 U2AF2 1 5 0
chr3:18378170|18378325 DDX3X 2 0 0
chr3:18378170|18378325 ZC3H7B 1 0 0
chr3:18378170|18378325 RANGAP1 0 1 0
chr3:18378170|18378325 HNRNPA1 2 2 0
chr3:18378170|18378325 CSTF2T 1 1 0
chr3:18378170|18378325 CELF2 1 1 1
chr3:18378170|18378325 RBFOX2 0 1 0
chr3:18378170|18378325 LIN28B 1 0 0
chr3:18378170|18378325 TARDBP 1 0 0
chr3:18378170|18378325 RBM10 2 0 0
chr3:18378170|18378325 HNRNPL 0 4 0
chr3:18378170|18378325 TAF15 1 3 0
chr3:18378170|18378325 CPSF7 1 0 0
chr3:18378170|18378325 NUDT21 2 0 0
chr3:18378170|18378325 HNRNPC 3 5 0
chr3:18378170|18378325 EWSR1 1 0 0
chr3:18378170|18378325 EIF4A3 0 1 1
chr3:18378170|18378325 NOP58 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab