CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184166245|184166629
Strand +
CircType exon
Host Gene ENSG00000161202.16;
Algorism CIRI2;
Sequence TTGGCTACAGTCAGGGTGATGGGCCCCGGTTTGTGCACAATCTCCCGCAGTACCCGGACTGCATCGTCATTACTCATGTTCTCAAAGTTGATCTCGTTTACCTGGGAAAGGACCAGGAGTGGGATAAACAGCTGTGCTGGGGAGGATGAAAAGGGAACTCAACTTGGTAGGTCAGGGAGTCTTCCCCCAACCAAGAAGGGGCCTCTGAAGGAGCAGGGTACAGATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCTCCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184166245|184166629 hsa-miR-192-5p 0 0 1
chr3:184166245|184166629 hsa-miR-192-3p 0 0 1
chr3:184166245|184166629 hsa-miR-148a-5p 0 0 1
chr3:184166245|184166629 hsa-miR-148a-3p 0 0 1
chr3:184166245|184166629 hsa-miR-10a-5p 0 0 1
chr3:184166245|184166629 hsa-miR-10a-3p 0 0 1
chr3:184166245|184166629 hsa-miR-10b-5p 0 0 1
chr3:184166245|184166629 hsa-miR-10b-3p 0 0 1
chr3:184166245|184166629 hsa-miR-204-5p 0 0 1
chr3:184166245|184166629 hsa-miR-204-3p 0 0 1
chr3:184166245|184166629 hsa-miR-205-5p 0 0 1
chr3:184166245|184166629 hsa-miR-205-3p 0 0 1
chr3:184166245|184166629 hsa-miR-211-5p 0 0 1
chr3:184166245|184166629 hsa-miR-211-3p 0 0 1
chr3:184166245|184166629 hsa-miR-215-5p 0 0 1
chr3:184166245|184166629 hsa-miR-215-3p 0 0 1
chr3:184166245|184166629 hsa-miR-152-5p 0 0 1
chr3:184166245|184166629 hsa-miR-152-3p 0 0 1
chr3:184166245|184166629 hsa-miR-146a-5p 0 0 1
chr3:184166245|184166629 hsa-miR-146a-3p 0 0 1
chr3:184166245|184166629 hsa-miR-148b-5p 0 0 1
chr3:184166245|184166629 hsa-miR-148b-3p 0 0 1
chr3:184166245|184166629 hsa-miR-552-5p 0 0 1
chr3:184166245|184166629 hsa-miR-552-3p 0 0 1
chr3:184166245|184166629 hsa-miR-580-5p 0 0 1
chr3:184166245|184166629 hsa-miR-580-3p 0 0 1
chr3:184166245|184166629 hsa-miR-589-5p 0 0 1
chr3:184166245|184166629 hsa-miR-589-3p 0 0 1
chr3:184166245|184166629 hsa-miR-623 -12 0 1
chr3:184166245|184166629 hsa-miR-625-5p 0 0 1
chr3:184166245|184166629 hsa-miR-625-3p 0 0 1
chr3:184166245|184166629 hsa-miR-190b-5p 0 0 1
chr3:184166245|184166629 hsa-miR-190b-3p 0 0 1
chr3:184166245|184166629 hsa-miR-665 0 0 1
chr3:184166245|184166629 hsa-miR-943 0 1 1
chr3:184166245|184166629 hsa-miR-1183 -13 0 1
chr3:184166245|184166629 hsa-miR-1248 2 0 1
chr3:184166245|184166629 hsa-miR-1275 -7 1 1
chr3:184166245|184166629 hsa-miR-1321 -6 1 1
chr3:184166245|184166629 hsa-miR-1207-5p -13 1 1
chr3:184166245|184166629 hsa-miR-125a-5p -8 0 1
chr3:184166245|184166629 hsa-miR-483-3p -5 1 1
chr3:184166245|184166629 hsa-miR-146b-5p -4 0 1
chr3:184166245|184166629 hsa-miR-125b 0 0 1
chr3:184166245|184166629 hsa-miR-7 0 0 1
chr3:184166245|184166629 hsa-miR-1300 0 0 1
chr3:184166245|184166629 hsa-miR-190 0 0 1
chr3:184166245|184166629 hsa-miR-4286 -12 1 0
chr3:184166245|184166629 hsa-miR-3911 -12 1 0
chr3:184166245|184166629 hsa-miR-5186 -10 1 0
chr3:184166245|184166629 hsa-miR-8055 -14 1 0
chr3:184166245|184166629 hsa-miR-8087 -7 1 0
chr3:184166245|184166629 hsa-miR-141-5p -7 1 0
chr3:184166245|184166629 hsa-miR-6749-3p -14 1 0
chr3:184166245|184166629 hsa-miR-7-5p -4 1 0
chr3:184166245|184166629 hsa-miR-6747-5p -17 1 0
chr3:184166245|184166629 hsa-miR-6799-5p -19 1 0
chr3:184166245|184166629 hsa-miR-6721-5p -9 1 0
chr3:184166245|184166629 hsa-miR-6832-3p -19 1 0
chr3:184166245|184166629 hsa-miR-6884-3p -4 1 0
chr3:184166245|184166629 hsa-miR-6809-3p -17 1 0
chr3:184166245|184166629 hsa-miR-4732-3p -17 1 0
chr3:184166245|184166629 hsa-miR-5088-3p -5 1 0
chr3:184166245|184166629 hsa-miR-3156-3p -6 1 0
chr3:184166245|184166629 hsa-miR-4763-3p -11 1 0
chr3:184166245|184166629 hsa-miR-6754-5p -9 1 0
chr3:184166245|184166629 hsa-miR-6808-5p -19 1 0
chr3:184166245|184166629 hsa-miR-6879-5p -14 1 0
chr3:184166245|184166629 hsa-miR-6780b-5p -5 1 0
chr3:184166245|184166629 hsa-miR-3689a-3p -10 1 0
chr3:184166245|184166629 hsa-miR-4632-5p -10 1 0
chr3:184166245|184166629 hsa-miR-4725-3p -4 1 0
chr3:184166245|184166629 hsa-miR-4436b-3p -8 1 0
chr3:184166245|184166629 hsa-miR-7843-5p -6 1 0
chr3:184166245|184166629 hsa-miR-3689d -6 1 0
chr3:184166245|184166629 hsa-miR-4756-5p -11 1 0
chr3:184166245|184166629 hsa-miR-5006-3p -13 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:184166245|184166629
ORF Type ORF1
Protein Length 100
Nucleotide Length 300
Protein Sequence LATVRVMGPGLCTISRSTRTASSLLMFSKLISFTWERTRSGINSCAGEDEKGTQLGRSGSLPPTKKGPLKEQGTDGRTPPCPLSTPPPRMGTDTCNNISP
Nucleotide Sequence TTGGCTACAGTCAGGGTGATGGGCCCCGGTTTGTGCACAATCTCCCGCAGTACCCGGACTGCATCGTCATTACTCATGTTCTCAAAGTTGATCTCGTTTACCTGGGAAAGGACCAGGAGTGGGATAAACAGCTGTGCTGGGGAGGATGAAAAGGGAACTCAACTTGGTAGGTCAGGGAGTCTTCCCCCAACCAAGAAGGGGCCTCTGAAGGAGCAGGGTACAGATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCTCCT
CircID chr3:184166245|184166629
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MVGHLPALYPHHRLGWALIPVTTYLL
Nucleotide Sequence ATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCTCCTG
CircID chr3:184166245|184166629
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MLLQVSVPILGGGVDRGQGGVLPSVPCSFRGPFLVGGRLPDLPS
Nucleotide Sequence ATGTTGTTACAGGTATCAGTGCCCATCCTAGGCGGTGGTGTGGATAGAGGGCAGGGAGGTGTCCTACCATCTGTACCCTGCTCCTTCAGAGGCCCCTTCTTGGTTGGGGGAAGACTCCCTGACCTACCAAGTTGA
CircID chr3:184166245|184166629
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MFIPLLVLSQVNEINFENMSNDDAVRVLREIVHKPGPITLTVA
Nucleotide Sequence CTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGAGAACATGAGTAATGACGATGCAGTCCGGGTACTGCGGGAGATTGTGCACAAACCGGGGCCCATCACCCTGACTGTAGCC
CircID chr3:184166245|184166629
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MYPAPSEAPSWLGEDSLTYQVEFPFHPPQHSCLSHSWSFPR
Nucleotide Sequence CTGTACCCTGCTCCTTCAGAGGCCCCTTCTTGGTTGGGGGAAGACTCCCTGACCTACCAAGTTGAGTTCCCTTTTCATCCTCCCCAGCACAGCTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAA
CircID chr3:184166245|184166629
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MSSLFILPSTAVYPTPGPFPGKRDQL
Nucleotide Sequence TTGAGTTCCCTTTTCATCCTCCCCAGCACAGCTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab