CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184166249|184166522
Strand +
CircType exon
Host Gene ENSG00000161202.16;
Algorism CIRI2;
Sequence CCCGGTTTGTGCACAATCTCCCGCAGTACCCGGACTGCATCGTCATTACTCATGTTCTCAAAGTTGATCTCGTTTACCTGGGAAAGGACCAGGAGTGGGATAAACAGCTGTGCTGGGGAGGATGAAAAGGGAACTCAACTTGGTAGGTCAGGGAGTCTTCCCCCAACCAAGAAGGGGCCTCTGAAGGAGCAGGGTACAGATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184166249|184166522 hsa-miR-192-5p 0 0 1
chr3:184166249|184166522 hsa-miR-192-3p 0 0 1
chr3:184166249|184166522 hsa-miR-148a-5p 0 0 1
chr3:184166249|184166522 hsa-miR-148a-3p 0 0 1
chr3:184166249|184166522 hsa-miR-10a-5p 0 0 1
chr3:184166249|184166522 hsa-miR-10a-3p 0 0 1
chr3:184166249|184166522 hsa-miR-10b-5p 0 0 1
chr3:184166249|184166522 hsa-miR-10b-3p 0 0 1
chr3:184166249|184166522 hsa-miR-204-5p 0 0 1
chr3:184166249|184166522 hsa-miR-204-3p 0 0 1
chr3:184166249|184166522 hsa-miR-205-5p 0 0 1
chr3:184166249|184166522 hsa-miR-205-3p 0 0 1
chr3:184166249|184166522 hsa-miR-211-5p 0 0 1
chr3:184166249|184166522 hsa-miR-211-3p 0 0 1
chr3:184166249|184166522 hsa-miR-215-5p 0 0 1
chr3:184166249|184166522 hsa-miR-215-3p 0 0 1
chr3:184166249|184166522 hsa-miR-152-5p 0 0 1
chr3:184166249|184166522 hsa-miR-152-3p 0 0 1
chr3:184166249|184166522 hsa-miR-146a-5p 0 0 1
chr3:184166249|184166522 hsa-miR-146a-3p 0 0 1
chr3:184166249|184166522 hsa-miR-148b-5p 0 0 1
chr3:184166249|184166522 hsa-miR-148b-3p 0 0 1
chr3:184166249|184166522 hsa-miR-552-5p 0 0 1
chr3:184166249|184166522 hsa-miR-552-3p 0 0 1
chr3:184166249|184166522 hsa-miR-580-5p 0 0 1
chr3:184166249|184166522 hsa-miR-580-3p 0 0 1
chr3:184166249|184166522 hsa-miR-589-5p 0 0 1
chr3:184166249|184166522 hsa-miR-589-3p 0 0 1
chr3:184166249|184166522 hsa-miR-623 0 0 1
chr3:184166249|184166522 hsa-miR-625-5p 0 0 1
chr3:184166249|184166522 hsa-miR-625-3p 0 0 1
chr3:184166249|184166522 hsa-miR-190b-5p 0 0 1
chr3:184166249|184166522 hsa-miR-190b-3p 0 0 1
chr3:184166249|184166522 hsa-miR-1248 0 0 1
chr3:184166249|184166522 hsa-miR-1275 0 1 1
chr3:184166249|184166522 hsa-miR-1321 0 1 1
chr3:184166249|184166522 hsa-miR-1207-5p 0 1 1
chr3:184166249|184166522 hsa-miR-125a-5p 0 0 1
chr3:184166249|184166522 hsa-miR-483-3p 0 1 1
chr3:184166249|184166522 hsa-miR-146b-5p 0 0 1
chr3:184166249|184166522 hsa-miR-125b 0 0 1
chr3:184166249|184166522 hsa-miR-7 0 0 1
chr3:184166249|184166522 hsa-miR-1300 0 0 1
chr3:184166249|184166522 hsa-miR-190 0 0 1
chr3:184166249|184166522 hsa-miR-3138 1 0 0
chr3:184166249|184166522 hsa-miR-4286 0 1 0
chr3:184166249|184166522 hsa-miR-3911 0 1 0
chr3:184166249|184166522 hsa-miR-4525 1 0 0
chr3:184166249|184166522 hsa-miR-5186 0 1 0
chr3:184166249|184166522 hsa-miR-8055 1 1 0
chr3:184166249|184166522 hsa-miR-8087 0 1 0
chr3:184166249|184166522 hsa-miR-8089 1 0 0
chr3:184166249|184166522 hsa-miR-141-5p 0 1 0
chr3:184166249|184166522 hsa-miR-6749-3p 0 1 0
chr3:184166249|184166522 hsa-miR-7-5p 0 1 0
chr3:184166249|184166522 hsa-miR-6747-5p 1 1 0
chr3:184166249|184166522 hsa-miR-6765-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6881-3p 1 0 0
chr3:184166249|184166522 hsa-miR-6799-5p 1 1 0
chr3:184166249|184166522 hsa-miR-6867-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6721-5p 0 1 0
chr3:184166249|184166522 hsa-miR-197-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6832-3p 1 1 0
chr3:184166249|184166522 hsa-miR-7109-5p 1 0 0
chr3:184166249|184166522 hsa-miR-7113-3p 1 0 0
chr3:184166249|184166522 hsa-miR-1228-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6809-3p 1 1 0
chr3:184166249|184166522 hsa-miR-6825-3p 1 0 0
chr3:184166249|184166522 hsa-miR-6869-5p 1 0 0
chr3:184166249|184166522 hsa-miR-7106-3p 1 0 0
chr3:184166249|184166522 hsa-miR-4732-3p 1 1 0
chr3:184166249|184166522 hsa-miR-1914-5p 1 0 0
chr3:184166249|184166522 hsa-miR-5088-3p 0 1 0
chr3:184166249|184166522 hsa-miR-4750-3p 1 0 0
chr3:184166249|184166522 hsa-miR-3156-3p 0 1 0
chr3:184166249|184166522 hsa-miR-4763-3p 0 1 0
chr3:184166249|184166522 hsa-miR-6743-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6752-5p 1 0 0
chr3:184166249|184166522 hsa-miR-6754-5p 0 1 0
chr3:184166249|184166522 hsa-miR-6808-5p 1 1 0
chr3:184166249|184166522 hsa-miR-6879-5p 0 1 0
chr3:184166249|184166522 hsa-miR-6780b-5p 0 1 0
chr3:184166249|184166522 hsa-miR-3689a-3p 0 1 0
chr3:184166249|184166522 hsa-miR-4632-5p 0 1 0
chr3:184166249|184166522 hsa-miR-4649-5p 1 0 0
chr3:184166249|184166522 hsa-miR-4725-3p 0 1 0
chr3:184166249|184166522 hsa-miR-4436b-3p 0 1 0
chr3:184166249|184166522 hsa-miR-7843-5p 0 1 0
chr3:184166249|184166522 hsa-miR-6750-5p 1 0 0
chr3:184166249|184166522 hsa-miR-3689d 0 1 0
chr3:184166249|184166522 hsa-miR-6849-5p 1 0 0
chr3:184166249|184166522 hsa-miR-4722-3p 1 0 0
chr3:184166249|184166522 hsa-miR-6727-3p 1 0 0
chr3:184166249|184166522 hsa-miR-11181-5p 1 0 0
chr3:184166249|184166522 hsa-miR-4723-3p 1 0 0
chr3:184166249|184166522 hsa-miR-7114-3p 1 0 0
chr3:184166249|184166522 hsa-miR-4756-5p 0 1 0
chr3:184166249|184166522 hsa-miR-5006-3p 0 1 0
chr3:184166249|184166522 hsa-miR-193a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:184166249|184166522
ORF Type ORF1
Protein Length 89
Nucleotide Length 267
Protein Sequence MCTISRSTRTASSLLMFSKLISFTWERTRSGINSCAGEDEKGTQLGRSGSLPPTKKGPLKEQGTDGRTPPCPLSTPPPRMGTDTCNNIS
Nucleotide Sequence TTGTGCACAATCTCCCGCAGTACCCGGACTGCATCGTCATTACTCATGTTCTCAAAGTTGATCTCGTTTACCTGGGAAAGGACCAGGAGTGGGATAAACAGCTGTGCTGGGGAGGATGAAAAGGGAACTCAACTTGGTAGGTCAGGGAGTCTTCCCCCAACCAAGAAGGGGCCTCTGAAGGAGCAGGGTACAGATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCT
CircID chr3:184166249|184166522
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MVGHLPALYPHHRLGWALIPVTTYL
Nucleotide Sequence ATGGTAGGACACCTCCCTGCCCTCTATCCACACCACCGCCTAGGATGGGCACTGATACCTGTAACAACATATCTC
CircID chr3:184166249|184166522
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MYPAPSEAPSWLGEDSLTYQVEFPFHPPQHSCLSHSWSFPR
Nucleotide Sequence CTGTACCCTGCTCCTTCAGAGGCCCCTTCTTGGTTGGGGGAAGACTCCCTGACCTACCAAGTTGAGTTCCCTTTTCATCCTCCCCAGCACAGCTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAA
CircID chr3:184166249|184166522
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MSSLFILPSTAVYPTPGPFPGKRDQL
Nucleotide Sequence TTGAGTTCCCTTTTCATCCTCCCCAGCACAGCTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGA
CircID chr3:184166249|184166522
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MLLQVSVPILGGGVDRGQGGVLPSVPCSFRGPFLVGGRLPDLPS
Nucleotide Sequence ATGTTGTTACAGGTATCAGTGCCCATCCTAGGCGGTGGTGTGGATAGAGGGCAGGGAGGTGTCCTACCATCTGTACCCTGCTCCTTCAGAGGCCCCTTCTTGGTTGGGGGAAGACTCCCTGACCTACCAAGTTGA
CircID chr3:184166249|184166522
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MFIPLLVLSQVNEINFENMSNDDAVRVLREIVHKP
Nucleotide Sequence CTGTTTATCCCACTCCTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGAGAACATGAGTAATGACGATGCAGTCCGGGTACTGCGGGAGATTGTGCACAAACCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab