CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184243832|184243963
Strand +
CircType exon
Host Gene ENSG00000214160.8;
Algorism CIRI2;
Sequence CCCAGCGGCTACCTGTCCCGCTCCTTTGACCTTGGCCGCCAGTTTCTGTTCCACTGGACAGTGAACTGGCGCTTCCTCCCAGAGGCGCTCTTCCTGCATCGAGCCTTCCACCTGGCCCTGTTGACTGCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184243832|184243963 hsa-miR-198 0 0 1
chr3:184243832|184243963 hsa-miR-326 0 0 1
chr3:184243832|184243963 hsa-miR-505-5p 0 0 1
chr3:184243832|184243963 hsa-miR-505-3p 0 0 1
chr3:184243832|184243963 hsa-miR-421 0 0 1
chr3:184243832|184243963 hsa-miR-1208 0 0 1
chr3:184243832|184243963 hsa-miR-1286 0 0 1
chr3:184243832|184243963 hsa-miR-1825 0 0 1
chr3:184243832|184243963 hsa-miR-199a-5p 0 0 1
chr3:184243832|184243963 hsa-miR-339-3p 0 1 1
chr3:184243832|184243963 hsa-miR-199b-5p 0 0 1
chr3:184243832|184243963 hsa-miR-330-5p 0 0 1
chr3:184243832|184243963 hsa-miR-658 1 0 0
chr3:184243832|184243963 hsa-miR-2861 1 0 0
chr3:184243832|184243963 hsa-miR-3196 1 0 0
chr3:184243832|184243963 hsa-miR-4298 0 1 0
chr3:184243832|184243963 hsa-miR-3918 0 1 0
chr3:184243832|184243963 hsa-miR-4467 1 0 0
chr3:184243832|184243963 hsa-miR-4533 1 0 0
chr3:184243832|184243963 hsa-miR-3978 1 0 0
chr3:184243832|184243963 hsa-miR-4741 1 0 0
chr3:184243832|184243963 hsa-miR-6081 1 1 0
chr3:184243832|184243963 hsa-miR-6090 1 0 0
chr3:184243832|184243963 hsa-miR-6125 1 0 0
chr3:184243832|184243963 hsa-miR-6132 1 0 0
chr3:184243832|184243963 hsa-miR-7706 0 1 0
chr3:184243832|184243963 hsa-miR-8072 1 0 0
chr3:184243832|184243963 hsa-miR-12114 0 1 0
chr3:184243832|184243963 hsa-miR-4433b-3p 1 0 0
chr3:184243832|184243963 hsa-miR-125a-3p 1 0 0
chr3:184243832|184243963 hsa-miR-8071 1 0 0
chr3:184243832|184243963 hsa-miR-766-5p 0 1 0
chr3:184243832|184243963 hsa-miR-6833-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6515-5p 1 0 0
chr3:184243832|184243963 hsa-miR-3192-5p 1 1 0
chr3:184243832|184243963 hsa-miR-6880-5p 1 0 0
chr3:184243832|184243963 hsa-miR-7847-3p 1 0 0
chr3:184243832|184243963 hsa-miR-4722-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6721-5p 1 0 0
chr3:184243832|184243963 hsa-miR-3190-3p 1 1 0
chr3:184243832|184243963 hsa-miR-6760-5p 1 0 0
chr3:184243832|184243963 hsa-miR-30b-3p 0 1 0
chr3:184243832|184243963 hsa-miR-3934-3p 1 0 0
chr3:184243832|184243963 hsa-miR-4738-3p 0 1 0
chr3:184243832|184243963 hsa-miR-1229-5p 1 0 0
chr3:184243832|184243963 hsa-miR-4640-5p 1 1 0
chr3:184243832|184243963 hsa-miR-1228-5p 1 0 0
chr3:184243832|184243963 hsa-miR-92b-5p 1 0 0
chr3:184243832|184243963 hsa-miR-4743-5p 1 0 0
chr3:184243832|184243963 hsa-miR-149-3p 1 0 0
chr3:184243832|184243963 hsa-miR-6802-5p 1 1 0
chr3:184243832|184243963 hsa-miR-6781-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6895-5p 0 1 0
chr3:184243832|184243963 hsa-miR-6801-5p 1 1 0
chr3:184243832|184243963 hsa-miR-668-5p 0 1 0
chr3:184243832|184243963 hsa-miR-10400-5p 1 0 0
chr3:184243832|184243963 hsa-miR-1207-5p 1 0 0
chr3:184243832|184243963 hsa-miR-1233-5p 1 0 0
chr3:184243832|184243963 hsa-miR-1273h-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6769b-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6778-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6816-5p 1 1 0
chr3:184243832|184243963 hsa-miR-6743-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6815-5p 1 0 0
chr3:184243832|184243963 hsa-miR-7107-5p 1 0 0
chr3:184243832|184243963 hsa-miR-1249-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6763-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6779-5p 0 1 0
chr3:184243832|184243963 hsa-miR-6780a-5p 1 1 0
chr3:184243832|184243963 hsa-miR-6879-5p 1 0 0
chr3:184243832|184243963 hsa-miR-7111-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6780b-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6836-5p 1 0 0
chr3:184243832|184243963 hsa-miR-4649-5p 1 0 0
chr3:184243832|184243963 hsa-miR-4725-3p 1 0 0
chr3:184243832|184243963 hsa-miR-4726-5p 1 1 0
chr3:184243832|184243963 hsa-miR-6729-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6795-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6831-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6845-5p 1 0 0
chr3:184243832|184243963 hsa-miR-4758-5p 1 0 0
chr3:184243832|184243963 hsa-miR-1914-3p 1 0 0
chr3:184243832|184243963 hsa-miR-6785-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6762-5p 1 0 0
chr3:184243832|184243963 hsa-miR-6837-5p 1 0 0
chr3:184243832|184243963 hsa-miR-3619-5p 1 0 0
chr3:184243832|184243963 hsa-miR-363-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:184243832|184243963
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAH
Nucleotide Sequence CTGTCCCGCTCCTTTGACCTTGGCCGCCAGTTTCTGTTCCACTGGACAGTGAACTGGCGCTTCCTCCCAGAGGCGCTCTTCCTGCATCGAGCCTTCCACCTGGCCCTGTTGACTGCCCAC
CircID chr3:184243832|184243963
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MDSELALPPRGALPASSLPPGPVDCP
Nucleotide Sequence CTGGACAGTGAACTGGCGCTTCCTCCCAGAGGCGCTCTTCCTGCATCGAGCCTTCCACCTGGCCCTGTTGACTGCCCA
CircID chr3:184243832|184243963
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MQEERLWEEAPVHCPVEQKLAAKVKGAGQVAAG
Nucleotide Sequence ATGCAGGAAGAGCGCCTCTGGGAGGAAGCGCCAGTTCACTGTCCAGTGGAACAGAAACTGGCGGCCAAGGTCAAAGGAGCGGGACAGGTAGCCGCTGGG
CircID chr3:184243832|184243963
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MGGSASSLSSGTETGGQGQRSGTGSRW
Nucleotide Sequence CTGGGAGGAAGCGCCAGTTCACTGTCCAGTGGAACAGAAACTGGCGGCCAAGGTCAAAGGAGCGGGACAGGTAGCCGCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab