CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184325480|184325618
Strand +
CircType exon
Host Gene ENSG00000114867.18;
Algorism CIRI2;
Sequence CGCCCCGACGCTTGTCACTGCCCTTGGCCATGAGCTGCTGCACTTTGATGTGCTCTCGATGTTCTTCCATCTCAGCCTCCTTATGGATCTGGTCAATGGTCTTGGGACCCTGATCCCCTCGGCGTGGCACCCAATTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184325480|184325618 hsa-miR-17-5p 0 0 1
chr3:184325480|184325618 hsa-miR-17-3p 0 0 1
chr3:184325480|184325618 hsa-miR-20a-5p 0 0 1
chr3:184325480|184325618 hsa-miR-20a-3p 0 0 1
chr3:184325480|184325618 hsa-miR-93-5p 0 0 1
chr3:184325480|184325618 hsa-miR-93-3p 0 0 1
chr3:184325480|184325618 hsa-miR-106a-5p 0 0 1
chr3:184325480|184325618 hsa-miR-106a-3p 0 0 1
chr3:184325480|184325618 hsa-miR-107 0 0 1
chr3:184325480|184325618 hsa-miR-34a-5p 0 0 1
chr3:184325480|184325618 hsa-miR-34a-3p 0 0 1
chr3:184325480|184325618 hsa-miR-143-5p 0 0 1
chr3:184325480|184325618 hsa-miR-143-3p 0 0 1
chr3:184325480|184325618 hsa-miR-106b-5p 0 0 1
chr3:184325480|184325618 hsa-miR-106b-3p 0 0 1
chr3:184325480|184325618 hsa-miR-20b-5p 0 0 1
chr3:184325480|184325618 hsa-miR-20b-3p 0 0 1
chr3:184325480|184325618 hsa-miR-449a 0 0 1
chr3:184325480|184325618 hsa-miR-519d-5p 0 0 1
chr3:184325480|184325618 hsa-miR-519d-3p 0 0 1
chr3:184325480|184325618 hsa-miR-520g-5p 0 0 1
chr3:184325480|184325618 hsa-miR-520g-3p 0 0 1
chr3:184325480|184325618 hsa-miR-520h 0 0 1
chr3:184325480|184325618 hsa-miR-646 0 0 1
chr3:184325480|184325618 hsa-miR-449b-5p 0 0 1
chr3:184325480|184325618 hsa-miR-449b-3p 0 0 1
chr3:184325480|184325618 hsa-miR-1227-5p 0 0 1
chr3:184325480|184325618 hsa-miR-1227-3p 0 0 1
chr3:184325480|184325618 hsa-miR-1262 0 0 1
chr3:184325480|184325618 hsa-miR-485-5p 0 0 1
chr3:184325480|184325618 hsa-miR-34c-5p 0 0 1
chr3:184325480|184325618 hsa-miR-519b-3p 0 0 1
chr3:184325480|184325618 hsa-miR-519c-3p 0 0 1
chr3:184325480|184325618 hsa-miR-103 0 0 1
chr3:184325480|184325618 hsa-miR-7 0 0 1
chr3:184325480|184325618 hsa-miR-519a 0 0 1
chr3:184325480|184325618 hsa-miR-3132 1 0 0
chr3:184325480|184325618 hsa-miR-3141 1 0 0
chr3:184325480|184325618 hsa-miR-4259 1 0 0
chr3:184325480|184325618 hsa-miR-3929 0 1 0
chr3:184325480|184325618 hsa-miR-4478 0 1 0
chr3:184325480|184325618 hsa-miR-4660 0 1 0
chr3:184325480|184325618 hsa-miR-4739 1 0 0
chr3:184325480|184325618 hsa-miR-5090 1 0 0
chr3:184325480|184325618 hsa-miR-5190 0 1 0
chr3:184325480|184325618 hsa-miR-5698 1 0 0
chr3:184325480|184325618 hsa-miR-6081 1 0 0
chr3:184325480|184325618 hsa-miR-6085 1 0 0
chr3:184325480|184325618 hsa-miR-6728-5p 0 1 0
chr3:184325480|184325618 hsa-miR-4786-5p 0 1 0
chr3:184325480|184325618 hsa-miR-4695-5p 0 1 0
chr3:184325480|184325618 hsa-miR-197-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6798-5p 1 0 0
chr3:184325480|184325618 hsa-miR-4640-5p 1 0 0
chr3:184325480|184325618 hsa-miR-1908-5p 1 0 0
chr3:184325480|184325618 hsa-miR-3648 1 0 0
chr3:184325480|184325618 hsa-miR-3616-3p 0 1 0
chr3:184325480|184325618 hsa-miR-7162-3p 0 1 0
chr3:184325480|184325618 hsa-miR-3944-5p 0 1 0
chr3:184325480|184325618 hsa-miR-6755-5p 1 0 0
chr3:184325480|184325618 hsa-miR-4763-3p 1 0 0
chr3:184325480|184325618 hsa-miR-6743-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6754-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6879-5p 1 0 0
chr3:184325480|184325618 hsa-miR-10526-3p 1 0 0
chr3:184325480|184325618 hsa-miR-328-5p 1 0 0
chr3:184325480|184325618 hsa-miR-449c-5p 1 0 0
chr3:184325480|184325618 hsa-miR-4632-5p 1 0 0
chr3:184325480|184325618 hsa-miR-4726-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6729-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6735-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6795-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6846-5p 1 0 0
chr3:184325480|184325618 hsa-miR-6848-5p 1 0 0
chr3:184325480|184325618 hsa-miR-4436b-3p 1 0 0
chr3:184325480|184325618 hsa-miR-3085-5p 1 0 0
chr3:184325480|184325618 hsa-miR-7843-5p 0 1 0
chr3:184325480|184325618 hsa-miR-6891-5p 0 1 0
chr3:184325480|184325618 hsa-miR-6884-5p 1 0 0
chr3:184325480|184325618 hsa-miR-2682-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:184325480|184325618
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MLHFDVLSMFFHLSLLMDLVNGLGTLIPSAWHPIA
Nucleotide Sequence CTGCTGCACTTTGATGTGCTCTCGATGTTCTTCCATCTCAGCCTCCTTATGGATCTGGTCAATGGTCTTGGGACCCTGATCCCCTCGGCGTGGCACCCAATTGCT
CircID chr3:184325480|184325618
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MSLPLAMSCCTLMCSRCSSISASLWIWSMVLGP
Nucleotide Sequence TTGTCACTGCCCTTGGCCATGAGCTGCTGCACTTTGATGTGCTCTCGATGTTCTTCCATCTCAGCCTCCTTATGGATCTGGTCAATGGTCTTGGGACCCTGA
CircID chr3:184325480|184325618
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MTRSIRRLRWKNIESTSKCSSSWPRAVTSVGA
Nucleotide Sequence TTGACCAGATCCATAAGGAGGCTGAGATGGAAGAACATCGAGAGCACATCAAAGTGCAGCAGCTCATGGCCAAGGGCAGTGACAAGCGTCGGGGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab