CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184334888|184335003
Strand +
CircType exon
Host Gene ENSG00000114867.18;
Algorism CIRI2;
Sequence TGCCACCGCCGCTGCTGCCGCCCCCCTGCAGTCCAGGCGGCTAGCCGGGCCATCTGTGTGTCCATGGGGCTCCAGGTCCCCGGCCCCACCAGCCCTCAGTTGTGGTCAGACTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184334888|184335003 hsa-miR-422a 0 1 1
chr3:184334888|184335003 hsa-miR-492 0 0 1
chr3:184334888|184335003 hsa-miR-503-5p 0 0 1
chr3:184334888|184335003 hsa-miR-503-3p 0 0 1
chr3:184334888|184335003 hsa-miR-619-5p 0 0 1
chr3:184334888|184335003 hsa-miR-619-3p 0 0 1
chr3:184334888|184335003 hsa-miR-631 0 0 1
chr3:184334888|184335003 hsa-miR-541-5p 0 0 1
chr3:184334888|184335003 hsa-miR-541-3p 0 0 1
chr3:184334888|184335003 hsa-miR-1205 0 0 1
chr3:184334888|184335003 hsa-miR-1288-5p 0 0 1
chr3:184334888|184335003 hsa-miR-1288-3p 0 0 1
chr3:184334888|184335003 hsa-miR-1225-3p 0 0 1
chr3:184334888|184335003 hsa-miR-654-5p 0 0 1
chr3:184334888|184335003 hsa-miR-509-3-5p 0 0 1
chr3:184334888|184335003 hsa-miR-509-5p 0 0 1
chr3:184334888|184335003 hsa-miR-378 0 0 1
chr3:184334888|184335003 hsa-miR-1269 0 0 1
chr3:184334888|184335003 hsa-miR-138 0 0 1
chr3:184334888|184335003 hsa-miR-1254 0 0 1
chr3:184334888|184335003 hsa-miR-346 1 0 0
chr3:184334888|184335003 hsa-miR-608 1 0 0
chr3:184334888|184335003 hsa-miR-762 1 1 0
chr3:184334888|184335003 hsa-miR-663b 0 1 0
chr3:184334888|184335003 hsa-miR-1538 0 1 0
chr3:184334888|184335003 hsa-miR-3139 1 0 0
chr3:184334888|184335003 hsa-miR-3196 1 1 0
chr3:184334888|184335003 hsa-miR-4254 0 1 0
chr3:184334888|184335003 hsa-miR-3649 0 1 0
chr3:184334888|184335003 hsa-miR-3661 0 1 0
chr3:184334888|184335003 hsa-miR-1268b 1 0 0
chr3:184334888|184335003 hsa-miR-4467 1 0 0
chr3:184334888|184335003 hsa-miR-4488 1 1 0
chr3:184334888|184335003 hsa-miR-4498 0 1 0
chr3:184334888|184335003 hsa-miR-4507 1 0 0
chr3:184334888|184335003 hsa-miR-4526 1 0 0
chr3:184334888|184335003 hsa-miR-1587 1 0 0
chr3:184334888|184335003 hsa-miR-3960 1 1 0
chr3:184334888|184335003 hsa-miR-4656 1 0 0
chr3:184334888|184335003 hsa-miR-4721 0 1 0
chr3:184334888|184335003 hsa-miR-4734 1 0 0
chr3:184334888|184335003 hsa-miR-4741 1 0 0
chr3:184334888|184335003 hsa-miR-6069 1 0 0
chr3:184334888|184335003 hsa-miR-8072 1 0 0
chr3:184334888|184335003 hsa-miR-4433b-3p 1 0 0
chr3:184334888|184335003 hsa-miR-504-3p 1 0 0
chr3:184334888|184335003 hsa-miR-6089 1 0 0
chr3:184334888|184335003 hsa-miR-6820-5p 0 1 0
chr3:184334888|184335003 hsa-miR-6741-5p 1 0 0
chr3:184334888|184335003 hsa-miR-3151-5p 0 1 0
chr3:184334888|184335003 hsa-miR-3180-3p 1 1 0
chr3:184334888|184335003 hsa-miR-6796-5p 0 1 0
chr3:184334888|184335003 hsa-miR-6829-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6732-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6805-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6798-5p 0 1 0
chr3:184334888|184335003 hsa-miR-6782-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6786-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6852-5p 1 1 0
chr3:184334888|184335003 hsa-miR-1226-5p 1 1 0
chr3:184334888|184335003 hsa-miR-6823-5p 1 0 0
chr3:184334888|184335003 hsa-miR-4787-5p 1 0 0
chr3:184334888|184335003 hsa-miR-4638-3p 1 0 0
chr3:184334888|184335003 hsa-miR-4446-3p 0 1 0
chr3:184334888|184335003 hsa-miR-6781-5p 0 1 0
chr3:184334888|184335003 hsa-miR-5010-5p 1 0 0
chr3:184334888|184335003 hsa-miR-490-5p 0 1 0
chr3:184334888|184335003 hsa-miR-10400-5p 1 1 0
chr3:184334888|184335003 hsa-miR-4763-3p 1 0 0
chr3:184334888|184335003 hsa-miR-6816-5p 0 1 0
chr3:184334888|184335003 hsa-miR-1343-5p 1 0 0
chr3:184334888|184335003 hsa-miR-5001-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6752-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6756-5p 1 1 0
chr3:184334888|184335003 hsa-miR-6803-5p 1 0 0
chr3:184334888|184335003 hsa-miR-3620-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6836-5p 1 0 0
chr3:184334888|184335003 hsa-miR-1237-5p 1 1 0
chr3:184334888|184335003 hsa-miR-328-5p 1 1 0
chr3:184334888|184335003 hsa-miR-4745-3p 0 1 0
chr3:184334888|184335003 hsa-miR-6846-5p 1 1 0
chr3:184334888|184335003 hsa-miR-6848-5p 1 0 0
chr3:184334888|184335003 hsa-miR-6889-5p 1 0 0
chr3:184334888|184335003 hsa-miR-4697-5p 0 1 0
chr3:184334888|184335003 hsa-miR-3116 0 1 0
chr3:184334888|184335003 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:184334888|184335003
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MQSRRLAGPSVCPWGSRSPAPPALSCGQTP
Nucleotide Sequence CTGCAGTCCAGGCGGCTAGCCGGGCCATCTGTGTGTCCATGGGGCTCCAGGTCCCCGGCCCCACCAGCCCTCAGTTGTGGTCAGACTCCT
CircID chr3:184334888|184335003
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MVGPGTWSPMDTQMARLAAWTAGGRQQRRW
Nucleotide Sequence CTGGTGGGGCCGGGGACCTGGAGCCCCATGGACACACAGATGGCCCGGCTAGCCGCCTGGACTGCAGGGGGGCGGCAGCAGCGGCGGTGG
CircID chr3:184334888|184335003
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MRAGGAGDLEPHGHTDGPASRLDCRGAAAAAVA
Nucleotide Sequence CTGAGGGCTGGTGGGGCCGGGGACCTGGAGCCCCATGGACACACAGATGGCCCGGCTAGCCGCCTGGACTGCAGGGGGGCGGCAGCAGCGGCGGTGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab