CircRNA Information

General Information
circRNA Basic Information
CircID chr3:184578758|184578870
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCAACACCCTGCTCATCCCGCCTGGCTCAGCTCAAGTCCACCTCCTCGAGGAAGCCTTCCTCTTCTCTAAACTCTTAGTGCCCTTTACAACAGGAGCACCCAGCTCAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:184578758|184578870 hsa-miR-558 0 0 1
chr3:184578758|184578870 hsa-miR-609 0 0 1
chr3:184578758|184578870 hsa-miR-611 0 0 1
chr3:184578758|184578870 hsa-miR-1238-5p 0 0 1
chr3:184578758|184578870 hsa-miR-1238-3p 0 0 1
chr3:184578758|184578870 hsa-miR-1303 0 1 1
chr3:184578758|184578870 hsa-miR-1253 0 0 1
chr3:184578758|184578870 hsa-miR-1255a 0 0 1
chr3:184578758|184578870 hsa-miR-516a-3p 0 1 1
chr3:184578758|184578870 hsa-miR-151-5p 0 0 1
chr3:184578758|184578870 hsa-miR-1255b 0 0 1
chr3:184578758|184578870 hsa-miR-575 1 0 0
chr3:184578758|184578870 hsa-miR-608 1 0 0
chr3:184578758|184578870 hsa-miR-663a 1 0 0
chr3:184578758|184578870 hsa-miR-762 1 0 0
chr3:184578758|184578870 hsa-miR-1268a 1 0 0
chr3:184578758|184578870 hsa-miR-1269a 1 0 0
chr3:184578758|184578870 hsa-miR-2861 1 0 0
chr3:184578758|184578870 hsa-miR-3131 1 0 0
chr3:184578758|184578870 hsa-miR-3138 1 0 0
chr3:184578758|184578870 hsa-miR-3141 1 0 0
chr3:184578758|184578870 hsa-miR-3195 1 0 0
chr3:184578758|184578870 hsa-miR-378c 1 0 0
chr3:184578758|184578870 hsa-miR-4298 1 0 0
chr3:184578758|184578870 hsa-miR-4322 1 0 0
chr3:184578758|184578870 hsa-miR-3937 1 1 0
chr3:184578758|184578870 hsa-miR-1268b 1 0 0
chr3:184578758|184578870 hsa-miR-378e 1 0 0
chr3:184578758|184578870 hsa-miR-378f 1 0 0
chr3:184578758|184578870 hsa-miR-378g 1 0 0
chr3:184578758|184578870 hsa-miR-4425 1 0 0
chr3:184578758|184578870 hsa-miR-4458 1 0 0
chr3:184578758|184578870 hsa-miR-378h 1 0 0
chr3:184578758|184578870 hsa-miR-3135b 1 0 0
chr3:184578758|184578870 hsa-miR-4486 1 0 0
chr3:184578758|184578870 hsa-miR-4487 1 0 0
chr3:184578758|184578870 hsa-miR-4488 1 0 0
chr3:184578758|184578870 hsa-miR-2392 1 0 0
chr3:184578758|184578870 hsa-miR-4514 1 0 0
chr3:184578758|184578870 hsa-miR-1269b 1 0 0
chr3:184578758|184578870 hsa-miR-4525 1 0 0
chr3:184578758|184578870 hsa-miR-1587 1 1 0
chr3:184578758|184578870 hsa-miR-4537 1 0 0
chr3:184578758|184578870 hsa-miR-3976 0 1 0
chr3:184578758|184578870 hsa-miR-4651 1 0 0
chr3:184578758|184578870 hsa-miR-4654 1 0 0
chr3:184578758|184578870 hsa-miR-4656 1 0 0
chr3:184578758|184578870 hsa-miR-4663 1 1 0
chr3:184578758|184578870 hsa-miR-4673 1 0 0
chr3:184578758|184578870 hsa-miR-4706 1 0 0
chr3:184578758|184578870 hsa-miR-4739 1 0 0
chr3:184578758|184578870 hsa-miR-6125 1 0 0
chr3:184578758|184578870 hsa-miR-378j 1 0 0
chr3:184578758|184578870 hsa-miR-8055 1 0 0
chr3:184578758|184578870 hsa-miR-8077 1 0 0
chr3:184578758|184578870 hsa-miR-12115 1 0 0
chr3:184578758|184578870 hsa-miR-3157-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6765-5p 1 0 0
chr3:184578758|184578870 hsa-miR-7106-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6825-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6894-5p 1 0 0
chr3:184578758|184578870 hsa-miR-27a-5p 1 0 0
chr3:184578758|184578870 hsa-miR-219a-1-3p 1 0 0
chr3:184578758|184578870 hsa-miR-6799-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6728-5p 1 0 0
chr3:184578758|184578870 hsa-miR-8071 1 1 0
chr3:184578758|184578870 hsa-miR-5187-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6807-5p 1 1 0
chr3:184578758|184578870 hsa-miR-7847-3p 1 0 0
chr3:184578758|184578870 hsa-miR-4695-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4755-3p 1 0 0
chr3:184578758|184578870 hsa-miR-7160-5p 1 0 0
chr3:184578758|184578870 hsa-miR-197-5p 1 0 0
chr3:184578758|184578870 hsa-miR-5589-5p 1 1 0
chr3:184578758|184578870 hsa-miR-6732-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6805-5p 1 0 0
chr3:184578758|184578870 hsa-miR-23a-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6782-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6835-5p 1 0 0
chr3:184578758|184578870 hsa-miR-1226-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4640-5p 1 0 0
chr3:184578758|184578870 hsa-miR-1908-5p 1 0 0
chr3:184578758|184578870 hsa-miR-92b-5p 1 0 0
chr3:184578758|184578870 hsa-miR-877-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4743-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4787-5p 1 0 0
chr3:184578758|184578870 hsa-miR-3160-3p 1 1 0
chr3:184578758|184578870 hsa-miR-937-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6824-5p 1 0 0
chr3:184578758|184578870 hsa-miR-5010-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4776-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6895-5p 1 0 0
chr3:184578758|184578870 hsa-miR-664b-5p 1 0 0
chr3:184578758|184578870 hsa-miR-3191-3p 1 0 0
chr3:184578758|184578870 hsa-miR-7846-3p 1 0 0
chr3:184578758|184578870 hsa-miR-1233-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6778-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6787-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6812-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6816-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6865-5p 1 0 0
chr3:184578758|184578870 hsa-miR-5001-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6752-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6754-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6803-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6815-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6819-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6842-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6851-5p 1 1 0
chr3:184578758|184578870 hsa-miR-7110-5p 1 0 0
chr3:184578758|184578870 hsa-miR-11181-3p 1 0 0
chr3:184578758|184578870 hsa-miR-6751-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6774-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6879-5p 1 0 0
chr3:184578758|184578870 hsa-miR-7111-5p 1 0 0
chr3:184578758|184578870 hsa-miR-3620-5p 1 1 0
chr3:184578758|184578870 hsa-miR-5196-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6780b-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6836-5p 1 0 0
chr3:184578758|184578870 hsa-miR-10396b-5p 1 0 0
chr3:184578758|184578870 hsa-miR-10526-3p 1 0 0
chr3:184578758|184578870 hsa-miR-4649-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4725-3p 1 0 0
chr3:184578758|184578870 hsa-miR-4726-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6729-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6777-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6794-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6795-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6858-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6845-5p 1 0 0
chr3:184578758|184578870 hsa-miR-939-5p 1 0 0
chr3:184578758|184578870 hsa-miR-4769-5p 1 0 0
chr3:184578758|184578870 hsa-miR-1199-5p 1 0 0
chr3:184578758|184578870 hsa-miR-378a-3p 1 0 0
chr3:184578758|184578870 hsa-miR-6724-5p 1 0 0
chr3:184578758|184578870 hsa-miR-6859-5p 0 1 0
chr3:184578758|184578870 hsa-miR-4676-5p 1 0 0
chr3:184578758|184578870 hsa-miR-1255b-5p 0 1 0
chr3:184578758|184578870 hsa-miR-378d 1 0 0
chr3:184578758|184578870 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:184578758|184578870
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MLIPPGSAQVHLLEEAFLFSKLLVPFTTGAPSST
Nucleotide Sequence CTGCTCATCCCGCCTGGCTCAGCTCAAGTCCACCTCCTCGAGGAAGCCTTCCTCTTCTCTAAACTCTTAGTGCCCTTTACAACAGGAGCACCCAGCTCAACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab